Gene Dshi_1201 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDshi_1201 
Symbol 
ID5711969 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDinoroseobacter shibae DFL 12 
KingdomBacteria 
Replicon accessionNC_009952 
Strand+ 
Start bp1241780 
End bp1242331 
Gene Length552 bp 
Protein Length183 aa 
Translation table11 
GC content73% 
IMG OID641267112 
Producttetratricopeptide TPR_2 repeat protein 
Protein accessionYP_001532544 
Protein GI159043750 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones27 
Plasmid unclonability p-value0.564024 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones33 
Fosmid unclonability p-value0.522722 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAGACATG GACTTCTCGC CCTGGTGCTT GCGATGGGCC TGCCCGCGAC GGGCTGGGCC 
GAGGGCTGTG CACCCGTGCC CGACACCCGC GCGGAGATCG CGGGCCTGCA CGCACAGCTC 
CAGGCGGCCC CCTCGGAGAC CGCCGCCCGC CCCCTGATCG GCGCGCTATG GCAGGTCTGG 
ACCCGCGCGC CGGACGCGGC CGCGCAGGCG CTGCTGGACG AGGGGATGCG CAAGCGGCGG 
GAGTATGACT TCGCAGGGGC GGTGGAGGTG TTCGACGCGC TGATCGCCTA TTGCCCGGAC 
TATGCCGAGG GCTGGAACCA GCGTGCCTTT GCCCGGTTCC TGCAAGACCG CTACGATGCG 
GCGCTGGGCG ATCTCGACCG GGCGCTCGCG CTCAGCCCGA CCCATACCGC GGCCCTGTCG 
GGCAAGGCGC TGACCCTGAT CCGGATGGGG CGGATGGGGC TGGCCCAAGA CGTGCTGCGC 
GCGGCGGTGG CGCTGAACCC GTGGCTGCCA GAGCGCGTCT ACCTGCTGCG CCCGCCAGGG 
CGGGAGCTCT GA
 
Protein sequence
MRHGLLALVL AMGLPATGWA EGCAPVPDTR AEIAGLHAQL QAAPSETAAR PLIGALWQVW 
TRAPDAAAQA LLDEGMRKRR EYDFAGAVEV FDALIAYCPD YAEGWNQRAF ARFLQDRYDA 
ALGDLDRALA LSPTHTAALS GKALTLIRMG RMGLAQDVLR AAVALNPWLP ERVYLLRPPG 
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