Gene Dshi_1187 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDshi_1187 
Symbol 
ID5711955 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDinoroseobacter shibae DFL 12 
KingdomBacteria 
Replicon accessionNC_009952 
Strand
Start bp1222807 
End bp1224003 
Gene Length1197 bp 
Protein Length398 aa 
Translation table11 
GC content72% 
IMG OID641267098 
ProductSurA domain protein 
Protein accessionYP_001532530 
Protein GI159043736 
COG category[O] Posttranslational modification, protein turnover, chaperones 
COG ID[COG0760] Parvulin-like peptidyl-prolyl isomerase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones18 
Plasmid unclonability p-value0.0614007 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones34 
Fosmid unclonability p-value0.705805 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCGCGTCA TATCCACCGC CCTGCTCGCC CTTGCGATGC TGATCGGTCA GCCGGCGACC 
AGCCAGGCGC AGACCTTCGG TCCGGTGATC ACGGTCAACA ACGAAGGGAT CAGCGGCTAC
GAGCTGGAGC AGCGGGAGAA GTTCGTCACC GCCCTGCGGC TGCCGGGCGA TCCGGCGCGG
CTGGCCCGCG AGGGGCTGAT CGAGGACAAG CTCAAGCTGC AGGCGGCGCG CGCGGCCGGT
CTGGAGATCG GGATCGACGA GCTGGAGCTG GGGCTGGAGG AGTTCGCCAG CCGCGCCAAC
CTGACCACCG AACAGTTCAT CGCCGCGCTG GCCGACGAGG GTGTGGCCCC CGAGACGTTT
CGCGATTTCG TGCGGGCCGA CCTGGTGTGG CGGGAGCTGA TCCGCCAGCG GTTCGGTCCC
CGCGCGCGCG TGTCGGATGC CGAGGTCGAG CGCGCGCTGG CGCTGCAGGG GGCGGCCTCC
GGGGCGCGCA TCCGGGTGGC CGAGATCATC ATCCCGACCC CGCCCGACCG GCGGGTGGAG
GCCGAAACGC TTGCTGCGAA CATCCGCGAG CGGGTCCAGA CCACGGCGCA GTTCTCCGAG
GCGGCGCAGC GGTTCTCGGC GGCGTCGTCG CGCGCCAATG GCGGCTTGCG CGACTGGATC
GCGGTCTCGG AGCTGCCGCC GGGGCTGGCG CAGCGATTGC TGACCCTGGG GCCGGGCGAC
GTGTCGGACC CGGTGCCCCT GGGCGACCAG GCGATCGCGC TGTTCCAGGT GCGCGGCTTC
CAGGAAAGCG CCGCCCGCGC GCCCAGCACG GTCTCGGTGG ACCTTGCGCG CCTGCCCTTG
CCCGCGGACC CGGAGGCGGC CGCCCGGCTG CGCGCGCGTC TGGCGGCGGA GATCGACGTC
TGCGACGACC TCTATGGGCT GGCGCGGGAC CTGCCCGAGG GCAGCTTGCG GCGCGAGGTA
TTGGCCGCGG CGGAGATCCC GAGCGACATC GCCACGGCGC TCGCCGGTCT CGACAACCAG
GAGAGCACCG AGATCGCCCG CGCCGGGGGC CGCGAGCATA TCATGCTCTG CACCCGGACC
ACGGCGCTGG AAGAGGACGA CGAGGGCACC CTGCGGCGAC AGCTGCTGAA CCAGCGGCTC
GGGTCCTACG CGGCGAACTA CCTGCAGGAA CTGCTCGCCG AAGCCACGAT CCAATGA
 
Protein sequence
MRVISTALLA LAMLIGQPAT SQAQTFGPVI TVNNEGISGY ELEQREKFVT ALRLPGDPAR 
LAREGLIEDK LKLQAARAAG LEIGIDELEL GLEEFASRAN LTTEQFIAAL ADEGVAPETF
RDFVRADLVW RELIRQRFGP RARVSDAEVE RALALQGAAS GARIRVAEII IPTPPDRRVE
AETLAANIRE RVQTTAQFSE AAQRFSAASS RANGGLRDWI AVSELPPGLA QRLLTLGPGD
VSDPVPLGDQ AIALFQVRGF QESAARAPST VSVDLARLPL PADPEAAARL RARLAAEIDV
CDDLYGLARD LPEGSLRREV LAAAEIPSDI ATALAGLDNQ ESTEIARAGG REHIMLCTRT
TALEEDDEGT LRRQLLNQRL GSYAANYLQE LLAEATIQ