| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_1184 |
|---|
| Symbol | ispG |
|---|
| ID | 5711952 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dinoroseobacter shibae DFL 12 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009952 |
|---|
| Strand | + |
|---|
| Start bp | 1219665 |
|---|
| End bp | 1220816 |
|---|
| Gene Length | 1152 bp |
|---|
| Protein Length | 383 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 641267095 |
|---|
| Product | 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase |
|---|
| Protein accession | YP_001532527 |
|---|
| Protein GI | 159043733 |
|---|
| COG category | [I] Lipid transport and metabolism |
|---|
| COG ID | [COG0821] Enzyme involved in the deoxyxylulose pathway of isoprenoid biosynthesis |
|---|
| TIGRFAM ID | [TIGR00612] 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 26 |
|---|
| Plasmid unclonability p-value | 0.793659 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 33 |
|---|
| Fosmid unclonability p-value | 0.491958 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCGCATA ACGCAATTCG TCCCTGGCGC AACATCTACC GCCGGAAGTC GCGCCAGATC
CATGTCGGCC CCGTGCCCAT CGGCGGCGAT GCCCCGATCG CGGTGCAGAC CATGACAAAC
ACCCTGACCA CCGACATTCC CGGCACCATC GCCCAGGTGC AGGCCGCCGC CGATGCCGGG
GCGGATATCG TCCGCGTCTC GGTGCCCGAT GTCGACAGCT CCCGCGCCTT GAAGGAGATC
GTCCGCGAAA GCCCCGTGCC GATCGTTGCG GACATCCATT TCCACTACAA ACGCGGGATC
GAGGCCGCCG AAGCCGGTGC CGCCTGCCTG CGGATCAACC CGGGCAATAT CGGCGACGAA
AAGCGCGTCA AGGAGGTCAT CAAGGCCGCC CGCGACAACA ATTGCTCGAT GCGGATCGGC
GTGAACGCGG GCTCGCTGGA AAAACACCTG CTCGACAAAT ATGCCGAGCC CTGTCCCGAG
GCCATGGTCG AGTCGGCGCT CGATCATATC AAGATCCTGC AGGACAACGA CTTTCACGAG
TTCAAGATCT CCTGCAAGGC CTCCGACGTG TTCCTCTCGG CCGCCGCCTA CCAGGCGCTT
GCGGACGCCA CGGACGCGCC GCTCCATCTC GGGATCACCG AGGCAGGCGG GCTGATGTCC
GGCACGATCA AGTCCGCCAT CGGGCTCGGC AACCTGCTCT GGATGGGGAT CGGCGACACG
ATCCGCGTCA GCCTCTCCGC CGACCCGGTC GAAGAGATCA AGGTCGGCTA TGACATCCTC
AAATCCCTCG GCCTGCGCCA CCGTGGCGTC AATGTGATCT CCTGCCCGTC CTGCGCGCGG
CAGGGCTTCG ATGTGATCAA GACCGTCGAG GCGCTGGAAC AGCGGCTCGA ACACATCAAG
ACGCCTATGA GCCTCTCGAT CATCGGCTGC GTGGTGAACG GACCGGGCGA GGCGCTGATG
ACCGATGTGG GCTTCACCGG CGGCGGCGCC GGGTCGGGCA TGGTCTATCT CGCGGGCAAA
CAGAGCCACA AGATGTCCAA CGAGCAGATG ATCGACCATA TCGTCGAGCA GGTGGAAAAG
AGAGCCGCCG AACTCGACGC GATCGAAGCC GCCGAGGCTG CGCAGGACGC CGCCCGCGAA
CCGGCAGAAT AA
|
|---|
| Protein sequence | MSHNAIRPWR NIYRRKSRQI HVGPVPIGGD APIAVQTMTN TLTTDIPGTI AQVQAAADAG
ADIVRVSVPD VDSSRALKEI VRESPVPIVA DIHFHYKRGI EAAEAGAACL RINPGNIGDE
KRVKEVIKAA RDNNCSMRIG VNAGSLEKHL LDKYAEPCPE AMVESALDHI KILQDNDFHE
FKISCKASDV FLSAAAYQAL ADATDAPLHL GITEAGGLMS GTIKSAIGLG NLLWMGIGDT
IRVSLSADPV EEIKVGYDIL KSLGLRHRGV NVISCPSCAR QGFDVIKTVE ALEQRLEHIK
TPMSLSIIGC VVNGPGEALM TDVGFTGGGA GSGMVYLAGK QSHKMSNEQM IDHIVEQVEK
RAAELDAIEA AEAAQDAARE PAE
|
|---|
| |