| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_1179 |
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| Symbol | |
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| ID | 5711947 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dinoroseobacter shibae DFL 12 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009952 |
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| Strand | + |
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| Start bp | 1210889 |
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| End bp | 1214206 |
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| Gene Length | 3318 bp |
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| Protein Length | 1105 aa |
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| Translation table | 11 |
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| GC content | 74% |
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| IMG OID | 641267090 |
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| Product | hypothetical protein |
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| Protein accession | YP_001532522 |
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| Protein GI | 159043728 |
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| COG category | [S] Function unknown |
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| COG ID | [COG3164] Predicted membrane protein |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.00453923 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 31 |
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| Fosmid unclonability p-value | 0.431932 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGTCCGACC CGACCGTCCC CGACCCGGAG ACGCAGCATA CCCCCGCGCA GGACAGCCGT
CCGCGGTCGG GGCTTGTGGT GCTCATGGCC GCGGCACTCC TGCTGGCGGG GATCGGCGGG
TTGGCGGCCT TCGCGCTGCG CGGCAGCGTC GCGGTGCCGG AGCCGCTGGT CCAGCGGGCG
CAGGCGGTTC TGTCCCGGGC GCTGGACGGA CGCGGCGATG CGGATCTCGG CGGGATCGAG
CTCTACCTGA CCGAGGAGGG CAGGCCGCGG GTTTCGCTCA CCGGGCTGAC CCTGCGCGCC
GCCGACAGTG TCGACAGCGT GACCTTGCCG CGCCTTGACG TGGTGCTGGC ACGCCGGGCG
CTGCTGCGCG GGGAGGTGCG GCCCGAAAGC GTGCGTCTCG AGGGTGCGCG CCTGCGGCTC
AGCCGCGACG CCGACGGGCT GCTCAGCCTG GCGTTCCAGT CGGGCGGGGC GTTGACGCGG
GTGCCCTCCC TGCCGGCGCT GATTGCCGAG ATCGAGGCGG TGTTCGACAT CCCCGCCCTG
CAGGATCTGC GCCGCGTCAC CCTGAGCGAT CTGACCCTGG ATCTGGCCGA CAGCCGCCTG
CGGCAGGTGG TGACCCTGTC GGGCGGCGAG GCGGTGCTGG ATGTCAGCGA GACCGCCCTG
TCGCTCGCGC TCGCGCTCGA CCTGCCGGGC ATCGGGACCG GGGCCTCCCT GCGGTTCACG
ACGCGCAAGG GCGATCCCGA AACCCGCGTC AGCCTGCGGA TGGATGCGGT CCCGGCCCAG
GTGCTGGCTC GGCAATCGCC GGTGCTTGCA CCGCTGGGGG TGTTCGCAGG CCCGGTCTCG
GCCCGGTTTG CGGGCGGGCT GCGCCCGGAC GGGCGGCTCT CCGCGCTCGA AGGGCAGCTG
GCGCTTGGCG TGGGCGCGCT GGCTTTGGGG GGCAAGGCCG CGCCGCTGGC GGTGTCGGAG
GCCACCGCGA CCTGGCGCTA TGCCCCGGAC CAGCGCCGCA TGTTTATCGA GGATATCGTG
CTCGACACCG ACCGGCTGCG CCTGACGGGG TCCGCCCATG GCGACATCGC CGACGGGGCC
GCCTCCGGCA GCGCCCCTGG CGGGTTTCCC GATCTGCTGC TCCATGCGGA CCTGTCGGAG
ATCTGGGTCG ACCCCGGCGC CCGCCTGCCG GGGCCCACCA CGCTCGCCCG GGTGATGCTC
GATGCCCGCT GGCGGACCGC CGCGCGGCGG CTGGAGATTG GCCAGCTTTA CGCCGAGGAC
GCCGTGACCG AGGCCCGGCT GCACGGGGCA GGACGGTTGG AGCTACCCGC GGGCGCGCCG
CCTTTCCTGC AGCTTGAAGT GCAGACCACC GGCCTGCCAT CGGCCCGCGT GCTCGACTTC
TGGCCGGTCT CCGGGCGGGG CGAGAAGGCG GGCGCCTGGC TGCGCGAGAA CCTGACCGGC
GGCATTCTCG ACAACGTCAC CGCCACGCTC ATGGCCACCC CGGGGGAGCG GCCGAAGCTC
GCCGCGAGCT TCGATCTCCG CGACGCGGCG GCCCGGGTGC TGCCGCAGTT TCCGACGCTC
ATGGCGGGTA GCGCCCATGG CACGCTCTTC GAGCACGAAT TCAACATCCG GGTCAGCGAG
GGCGAGATGG TCGTGCCCGA CCGTGGCCCC GTGGATCTCG CGGGCAGCAG CTTCCAGATC
CTCGACACCC GCATCCGCGG CGGCGACGCG CGGCTGCATC TCAGCGCCCG CGGCGCCGTG
CCCACGGCCC TCGCCCTGCT CGACAGCCCG CCGATCTCCC TGCTGGACCG GGTCGCGCTG
CCCCCTGACC GGCTCAGCGG CACGGTCGCC GCCCGGGCCG GGCTGACCGT GCCCCTGCGC
AAGGGGCGCA AGGTCGATCT CGACACGCTC TGGGTCGATG CGAGCCTGTC GGACCTGCGC
TTTGCCGAGG TCGCGCCGGG ACGAGATTTC GCCGCGCCCG ACCTGGACCT GACGATCACC
GACCGGACCG TGACCCTGGC CGGGACGGGG GCCTTGCAGG ACGTGCCGCT GGAGGTGGTG
CTGGCCCGCG CCTTCGACAC GCCCGCAGGG GACGGGACCG AGATTTCCGG CACCGCGCAA
CTGACCGCCC AAGGGCTCGC CGCCCTGGGG GTCGTGCTGC CTGAAGGCAC GGTGAGCGGG
CAGGGCGCGG TCGACTACCG CCTGCGCCTG CGCCCCGACG CGCCCCCGCG ACTGGAGCTG
ACCGGCGATC TCGCCGGGCT CGGCCTCAGC ATCCCGGCGC TCAACTGGCG CAAACCGGCC
TCGGCCCCGG GCACGCTGAT CGCCAGCCTC CGTCTCGGCC CGGTGCCGGC GGTCGATGCG
TTCCGCCTCT CCGCCGCGGG GCTGGAGGCC GAAGGTCGCA TCACCCTGCG CGAGGGCGGC
GGCGGGCTGG ACCGGATGGA GCTGGACCGG CTCAGTGTCG GGGATTGGCT CACGGGCCAG
GCGGTGCTGA CCGGGCAGGG GCCGGGCGTG GCGCCCACCG TGGCGCTCAC GGGCGGGCGG
CTGGATTTGC GCAACTTGCC GCGCGGCGAC GCAGGGGGCG ACGGGGCCCG GGCACCGCTG
CAGATCGCGC TCGACACCGT GCAAGTCACC GACGATCTGC GCCTGACAGG CGTGCGCGGG
GCCGTGGGCC GAAGCGGCGG CGTGATCGGC GGCACCCTGG CCGCGCAGGT CAATGGCGGC
GCGCCGGTCT CGCTCACCCT GGCCCGAGCG GCCTCCGGGC GGCAAGCGGT GCAAGTGCAG
GCCAGCGATG CCGGGGCGGT CCTGCGCGAC GCGGGCGTGT TGCGTACCCT GCGCGGCGGC
ACCCTGGACA TGCGGCTCGA AGTGCTGGAC GACCCACGCA TCCTCGAAGG ACAGGTTCGC
ATCACCGACG GCAACATCGT CGAAACCCCC GGCGCGGTGC AGCTTCTGTC GGCCATCAGC
ATCGTTGGCC TGCTGGACCA GATGGCCGAT GGCGGCATTG CTTTTTCCGA GATTGCCACC
GGTCTCGCAA TCTCGCCCGG CGGCATCACC CTGCGCGAGG GGCGCGCCAC GGGACCGTCC
CTGGGCATCA CCTTCGAAGG GGTGGTCATG CCCGCCCGCG ACCGGATCGA CCTGCAAGGG
GTGGTCTCGC CCTTCTATGC GCTCAACGCG CTGCCAGGGT CGCTGTTCGC GCGCCGGGGC
GAGGGGCTCG TGGGCGTCAG CTACCGGCTC GCCGGCTCCC CCTCGGCCCC GCAGGTGCAG
GTCAATCCGC TCTCGCTCTT GACACCGGGC CTCTTTCGCG ACCTTTTCCG CCGCGACCCC
CCCGATCTGA CGCAGTAG
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| Protein sequence | MSDPTVPDPE TQHTPAQDSR PRSGLVVLMA AALLLAGIGG LAAFALRGSV AVPEPLVQRA
QAVLSRALDG RGDADLGGIE LYLTEEGRPR VSLTGLTLRA ADSVDSVTLP RLDVVLARRA
LLRGEVRPES VRLEGARLRL SRDADGLLSL AFQSGGALTR VPSLPALIAE IEAVFDIPAL
QDLRRVTLSD LTLDLADSRL RQVVTLSGGE AVLDVSETAL SLALALDLPG IGTGASLRFT
TRKGDPETRV SLRMDAVPAQ VLARQSPVLA PLGVFAGPVS ARFAGGLRPD GRLSALEGQL
ALGVGALALG GKAAPLAVSE ATATWRYAPD QRRMFIEDIV LDTDRLRLTG SAHGDIADGA
ASGSAPGGFP DLLLHADLSE IWVDPGARLP GPTTLARVML DARWRTAARR LEIGQLYAED
AVTEARLHGA GRLELPAGAP PFLQLEVQTT GLPSARVLDF WPVSGRGEKA GAWLRENLTG
GILDNVTATL MATPGERPKL AASFDLRDAA ARVLPQFPTL MAGSAHGTLF EHEFNIRVSE
GEMVVPDRGP VDLAGSSFQI LDTRIRGGDA RLHLSARGAV PTALALLDSP PISLLDRVAL
PPDRLSGTVA ARAGLTVPLR KGRKVDLDTL WVDASLSDLR FAEVAPGRDF AAPDLDLTIT
DRTVTLAGTG ALQDVPLEVV LARAFDTPAG DGTEISGTAQ LTAQGLAALG VVLPEGTVSG
QGAVDYRLRL RPDAPPRLEL TGDLAGLGLS IPALNWRKPA SAPGTLIASL RLGPVPAVDA
FRLSAAGLEA EGRITLREGG GGLDRMELDR LSVGDWLTGQ AVLTGQGPGV APTVALTGGR
LDLRNLPRGD AGGDGARAPL QIALDTVQVT DDLRLTGVRG AVGRSGGVIG GTLAAQVNGG
APVSLTLARA ASGRQAVQVQ ASDAGAVLRD AGVLRTLRGG TLDMRLEVLD DPRILEGQVR
ITDGNIVETP GAVQLLSAIS IVGLLDQMAD GGIAFSEIAT GLAISPGGIT LREGRATGPS
LGITFEGVVM PARDRIDLQG VVSPFYALNA LPGSLFARRG EGLVGVSYRL AGSPSAPQVQ
VNPLSLLTPG LFRDLFRRDP PDLTQ
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