| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_1176 |
|---|
| Symbol | |
|---|
| ID | 5711944 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dinoroseobacter shibae DFL 12 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009952 |
|---|
| Strand | - |
|---|
| Start bp | 1207946 |
|---|
| End bp | 1209274 |
|---|
| Gene Length | 1329 bp |
|---|
| Protein Length | 442 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 641267087 |
|---|
| Product | peptidase M23B |
|---|
| Protein accession | YP_001532519 |
|---|
| Protein GI | 159043725 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0739] Membrane proteins related to metalloendopeptidases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 0.0217057 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 33 |
|---|
| Fosmid unclonability p-value | 0.4794 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGAGAACAC GCTTCGCGAG GCGTCTGGAA GCCTTGTTTC CGGAAAAACG TCTTTTCTTG
AAATCGGATG ATGCAACGCG GTTCGTGCGG CTGACCAGCG GCACGCAGGC TGTTCTGGCC
GTGGGCGGTG TCGGGTTGCT GGGCTGGACC ACCTTCGCCT CGGCCATGGT GCTGATCGCC
GCCCTCGGCG CGGGGGACTC CCGCGACCAG GCGCTGCGCG ACCAGCAGAT GTATGCCGAA
CGGCTCAACG CCCTGTCCGA AGAACGTGAC GCCCGCGCCG CGGAGGCCCG CGCCGCGCAG
GAACGGTTCG CCGCGGCCCT CCAGAAAGTC AGCGATATGC AGACCCGGCT GCTGGAAAGC
GAGAAGCGCC GCTCCGAGCT GGAGACCGGC GTGGACGTGG TGCAATCCAC CCTGCGCGCG
GCAATGGCCG AACGCGATGC GGCCCGGGCC GCTGCGGAGG AAGCCGCGAA CGAACTGGCC
GCCCTGACCG GCACGGAGAA GACCGAAGCC GCCCAGTTGC GTGACCTGGA ACAGACCCTC
GCCTTCCTCA CCAGTGCGCT CGAAGACACC GCGGTGCAGC GGGACGGGCT GGAAGGACAG
CACAGCGCGG CCATCGCCGA GATCGAGGAG CTGCTGCTGA CCCAGCAGCT GACCGAAGAG
CGCAACAATC GGGTGTTCGA GATCCTGGAG GACGCAGTGG CCGTCTCGGT CGCGCCCCTG
GAGCGGATGT TTGAAGAGGC CGGCGTGCCG GCGGACCGCA TCCTGGAGGA GCTGCGCCGC
AGCACCTCGG GCCAGGGGGG GCCGCTGGTG CCGATCACCC AGTCCACCCG TAGCCTGCCC
CAGGACGAGA TGAGCTATCG CACGCGGGAG ATCCTCGCCG GGCTCGACCG GTTGAACCTG
CACCGGATGG CGGTGGACCA GCTGCCCTTC GCGACCCCGG TAAAAGCCTC TTTCCGCTTC
ACCAGCCCGT TCGGATATCG CCGGGACCCC AAGGGTGGCG GGACGCGGAT GCACAAGGGC
ACGGATTTCG CAGCCGCCCA TGGCACGCCG ATCTACGCCA CCGCCGACGG GGTCGTGGTC
GATGCCGGCT GGCACAGCGG CTTTGGACGC ATGGTCAAGA TCCGCCATGC ATTCGGCTAT
CAAACTGTCT ACGCGCATAT GTCGAAACTG CGTGTGAAAG AAGGTCAACG GGTCTCGCGC
GGGGATCGGA TCGGTGATAT GGGAAGCACT GGCCGGTCGA CTGGGGTACA TCTGCACTAC
GAGGTGCACC AGTCTGGCAA ACCCGTGAAT CCGATGACCT TTATCAAGGC AGGCAAGAAT
GTTCTCTAA
|
|---|
| Protein sequence | MRTRFARRLE ALFPEKRLFL KSDDATRFVR LTSGTQAVLA VGGVGLLGWT TFASAMVLIA
ALGAGDSRDQ ALRDQQMYAE RLNALSEERD ARAAEARAAQ ERFAAALQKV SDMQTRLLES
EKRRSELETG VDVVQSTLRA AMAERDAARA AAEEAANELA ALTGTEKTEA AQLRDLEQTL
AFLTSALEDT AVQRDGLEGQ HSAAIAEIEE LLLTQQLTEE RNNRVFEILE DAVAVSVAPL
ERMFEEAGVP ADRILEELRR STSGQGGPLV PITQSTRSLP QDEMSYRTRE ILAGLDRLNL
HRMAVDQLPF ATPVKASFRF TSPFGYRRDP KGGGTRMHKG TDFAAAHGTP IYATADGVVV
DAGWHSGFGR MVKIRHAFGY QTVYAHMSKL RVKEGQRVSR GDRIGDMGST GRSTGVHLHY
EVHQSGKPVN PMTFIKAGKN VL
|
|---|
| |