| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_1156 |
|---|
| Symbol | |
|---|
| ID | 5711924 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dinoroseobacter shibae DFL 12 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009952 |
|---|
| Strand | + |
|---|
| Start bp | 1182178 |
|---|
| End bp | 1182645 |
|---|
| Gene Length | 468 bp |
|---|
| Protein Length | 155 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 641267067 |
|---|
| Product | transcriptional regulator |
|---|
| Protein accession | YP_001532499 |
|---|
| Protein GI | 159043705 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG1522] Transcriptional regulators |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 28 |
|---|
| Plasmid unclonability p-value | 0.675806 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 37 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCGGTTT CGCTCGACGC GACGGATCGG AAAATTCTCA GGGCGCTGCA GGCGGATGCC
AGCCAGTCGC TGGAGGAAAT CGCGCGACAG GTGGGGGCGT CGAAGACCCC GGTCTGGAAT
CGCATTCGCA AGCTGCGCGA GGCCGGGGTG ATCCGGCGGC AGACGGCGGT GCTGGACCCC
GAGGCGCTGG GTCTGGAGGC GTGTTTCTTC GTGCTGATCC GCACGTCCGA GCACGAGGCG
GAGTGGCAAA AGGCCTTCCT CAAGGCGCTG CTGGACCGGG ACGAGGTGCT GGAGGCGCAC
CGGCTGGCGG GCGATATCGA CTACATCCTC AAGGTGCGGG TGGAGAATGC CCGCGCCTAT
GACGTGTTCT ACCAGGCGCT GATCAGCGAG GTCCGCATCT ACAACGTGAC CGCGCTGCTT
TCGATGGAAG AGATCAAGTC GACCTTCGCC CTGCCGATTC CCGACTGA
|
|---|
| Protein sequence | MAVSLDATDR KILRALQADA SQSLEEIARQ VGASKTPVWN RIRKLREAGV IRRQTAVLDP
EALGLEACFF VLIRTSEHEA EWQKAFLKAL LDRDEVLEAH RLAGDIDYIL KVRVENARAY
DVFYQALISE VRIYNVTALL SMEEIKSTFA LPIPD
|
|---|
| |