| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_1141 |
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| Symbol | ctaB |
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| ID | 5711109 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dinoroseobacter shibae DFL 12 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009952 |
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| Strand | + |
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| Start bp | 1168989 |
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| End bp | 1169975 |
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| Gene Length | 987 bp |
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| Protein Length | 328 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 641267052 |
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| Product | protoheme IX farnesyltransferase |
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| Protein accession | YP_001532484 |
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| Protein GI | 159043690 |
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| COG category | [O] Posttranslational modification, protein turnover, chaperones |
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| COG ID | [COG0109] Polyprenyltransferase (cytochrome oxidase assembly factor) |
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| TIGRFAM ID | [TIGR01473] protoheme IX farnesyltransferase |
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Plasmid Coverage information |
| Num covering plasmid clones | 28 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 44 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCGGGCCG GCCCTTTTCG TGAAAGCCAG CGAGATCCCA TGAGCGACGC AAGCTTCGAC
AGATCCATGC CCCTGAGCGG CGAAGGCAGC TTTGGCGACT ATTTCGCCCT GCTCAAGCCG
CGCGTGATGT CCCTGGTGGT ATTCACCGCC CTTGTGGGGC TGCTCGTGGC GCCCGTCTCG
TTGCACCCGA TGGTTGGGTT CTGCGCGATC CTGTTCATCG CCGTGGGGGC AGGGGCCTCC
GGCGCGCTGA ACATGTGGTG GGACGCGGAT ATCGACGTGA TCATGAAGCG CACTGCGGGC
CGCCCCGTTC CGGCGGGCAA GGTGCAGCCG GGCGAGGCGC TGGCCCTGGG TCTGGGCCTG
TCGGGTCTGT CGGTGGTGAT GCTTGCGCTG GCCACCAACC TTCTGGCCGC GGGGCTTCTG
GCCTTCACGA TCTTCTTCTA TGCGGTCGTC TATTCCATGT GGCTCAAACG CTCCACGCCC
CAGAATATCG TGATCGGCGG GGCCGCGGGT GCCTTTCCTC CGATGATCGG CTGGGTGGCG
GCGACGGGTT CGGTCAGCCT CGAGGCGGTG CTGATGTTCG CGCTGATCTT CATGTGGACG
CCGCCGCATT TCTGGGCGCT CGCGCTCTTC ATGAAATCCG ACTACCACGA TGCGGGCGTG
CCGATGCTGA CCGTGACCCA CGGGCGCAAA TCGACCCGCA CTCATATCCT GGTCTATACC
GTGTTGCTGG TGCCTGTGGC GCTCGGCCTG GCGCTGACCC CGGTCGCGGG TCCACTTTAT
CTCGCCACGG CCCTTGTTCT GAACGCGATC TTCCTCAAGG GGGCGTGGGA CATCTGGCGC
CGTGACGAGG CGCAGGCGGA AGCGGATAAA TACGCGACCG AAAAACGCTT CTTCAAGTTT
TCGCTGCTCT ATCTCGCCCT GCATTTCACC GCGCTGCTGG CCGAGGCAAT CCTGACCCGC
AGCGGTCTTT GGACCTTCGG AGGGTAG
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| Protein sequence | MRAGPFRESQ RDPMSDASFD RSMPLSGEGS FGDYFALLKP RVMSLVVFTA LVGLLVAPVS
LHPMVGFCAI LFIAVGAGAS GALNMWWDAD IDVIMKRTAG RPVPAGKVQP GEALALGLGL
SGLSVVMLAL ATNLLAAGLL AFTIFFYAVV YSMWLKRSTP QNIVIGGAAG AFPPMIGWVA
ATGSVSLEAV LMFALIFMWT PPHFWALALF MKSDYHDAGV PMLTVTHGRK STRTHILVYT
VLLVPVALGL ALTPVAGPLY LATALVLNAI FLKGAWDIWR RDEAQAEADK YATEKRFFKF
SLLYLALHFT ALLAEAILTR SGLWTFGG
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