| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_1137 |
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| Symbol | topA |
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| ID | 5711105 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dinoroseobacter shibae DFL 12 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009952 |
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| Strand | - |
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| Start bp | 1162114 |
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| End bp | 1164816 |
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| Gene Length | 2703 bp |
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| Protein Length | 900 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 641267048 |
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| Product | DNA topoisomerase I |
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| Protein accession | YP_001532480 |
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| Protein GI | 159043686 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0550] Topoisomerase IA |
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| TIGRFAM ID | [TIGR01051] DNA topoisomerase I, bacterial |
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Plasmid Coverage information |
| Num covering plasmid clones | 19 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 40 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCCCGTTG TCGTCGTCGA GTCGCCCGCC AAAGCCAAGA CAATCAACAA ATATCTCGGC
AGCGACTTCA CGGTTCTTGC CTCTTACGGG CATGTACGCG ACCTGCCCCC GAAGGACGGA
TCGGTCGATC CCGAGCACGG GTTCGAGATG TTGTGGGAGA TCGCGAGCGA CAGTCGCAAG
CATGTCAAGG CCATCGCCGA CGCACTGAAG GATGACGACA CGCTGATCCT CGCCACCGAC
CCCGACAGGG AAGGCGAGGC GATCAGCTGG CACCTTCAGG AAGCCCTGAC CAAGCGCAAG
GCGATCAAGA AATCGACCGA TGTCAGCCGC GTTGTGTTCA ACGCCATCAC CAAGTCCGCG
GTGACCGAGG CGATGAAGAA TCCGCGCGAC GTGGACATGG AACTGGTCGA GGCGTATCTG
GCCCGCCGCG CGCTCGACTA TCTGGTGGGC TTCAACCTCA GCCCGGTGTT GTGGCGCAAG
CTGCCCGGCG CGAAATCGGC CGGACGGGTG CAGTCGGTCT GCCTGCGGCT GATCGTCGAG
CGAGAGATGG AGATCGAAGC CTTCGATCCC AGGGAATACT GGTCCGTGCG CGCGGTGCTG
GAGACCCCGC GCGGCCAGAC CTACGAGGCG CGGCTGACCG AGCTTGCGGG CAAGAAACTT
GACAAGTTCG ACCTCGCCAC GGCGGAGGCG GCGGAGCTTG CGGTGCAGGC GGTTACGTCG
CGCAAGCTGA GCGTGACGTC GGTCGAGGCC AAGCCCGGCA CCCGCAACCC CTCGGCCCCC
TTCATGACCT CGACGCTGCA GCAGGAGGCC AGCCGCAAGT TCGGCTTCGG CGCGCGTCAG
ACCATGTCGA CGGCTCAGCG GCTCTATGAG GCGGGCTACA TTACCTACAT GCGGACCGAC
GGGATCGACA TGGCGCCCGA GGCGGTGACC ATGGCCCGCG ATGCGATCAA GGAACGGTTC
GGGGCTGCGT ACCTGCCCGA CAGCCCGCGG ATCTACAAGA ACAAGGCCAA GAACGCCCAG
GAAGCCCACG AGTGTATCCG CCCAACGGAA ATGAGCCGTG CGCCCGAGGA CCTGAAGGTC
ACCGAGCCCG ATCAGCGCAA GCTTTACGAC CTGATCTGGA AGCGGACCCT GGCCAGCCAG
ATGGCCGCGG CACGGCTGGA GCGGACCACG GTCGAGATCG GCTCGCCCGA TGGCCAGGTC
GCGCTGCGCG CCACCGGGCA GGTCGTTGTT TTTGACGGGT TCATGAAGGT CTATACCGAA
GGACAGGACG AGGAGAGCAC CGCCGAGGAC GAGCGCCGCC TGCCCCAGAT CGGCCAGGGC
GACCCCGCGC CGCTGCACAA GGGCGGGATG GAGGCGGCCT TCGCCAAGGC CGGGTCGCGC
GAGGACGACG TGGTAGAGGC TGCGCCCACT GGTGGAATGC AGCAGGGCCC CGGAGGGCTT
CTGTCCGAAA ACGGCGCGGT GTTTGGACAG CAGCATTTCA CGCAGCCCCC GCCCCGCTAC
ACCGAGGCGA CGCTGGTCAA GCGGATGGAG GAGCTCGGCA TCGGGCGACC ATCGACCTAT
GCCTCGATCG TCACGACGAT CCAGGACCGC GGCTATGTCA CCAAGGACAA GAACCGGCTG
ATCCCCGAGG ACAAGGGCCG GTTGGTCACG GCGTTCCTGG TCAACTACTT CCGCAAATAC
GTGGGCTACG ACTTCACCGC CGATCTGGAA AACCAGCTCG ACGAGGTGTC CGCCGGGGAC
CGGAACTACA AGGATGTGCT CGACCGGTTC TGGCGCGATT TTTCCGCCGC GATCGCCGAG
ACCTCCGAGT TGCGCATCAC CGAGGTGCTG GAGAAGATCA ACGAGGTGCT GGCGCCGCAT
CTCTTCCCGC CGCGCGAGGA TGGCAAGCCG CCGCGGCTCT GCCCGAATTG CGAGATCGGG
CAGCTGTCGA TGCGCACGGC GCGGTCCGGC GGAGCGTTCA TCGGCTGCTC GAACTACCCC
GAGTGCCGCT ACACCCGGCC CTTCGGCCCG CCGGGCATGG AAGAAGCCAG CGGCATCCCG
CCTGAGGGCA AGCTTCTGGG CGAGGACGGT GGCGACGAGA TCCGCGTGTT CAAGGGCCGG
TTCGGGCCTT ACGTGCAGCG CGGGGCAGTC ACCGAGGAGA ACAAGAAGCC GCCGCGCCAG
TCGATCCCCA AAAGCTGGGT GCCGGAGGAG TTGGAACTGG ACAAGGCGGT GATGCTTTTG
TCCCTGCCCC GCCAGATCGG GCTGCACCCC GACGACGGCG TGCCGGTCTG GGCCAATATC
GGGCGCTACG GGCCCTACCT GAAACATGCC GACAGCACGT CGGACCGGGG CGGGACCAAC
GCCAATCTCG AAGATATCGA GGAGGTGTGG ACCGTGGGCA TGAACCGCGC GGTGCAGCTT
CTGGCCGAAA AGGTCGCCTC CCGCGGGGGG CGCGGCGCGG CGGCCAAACC CCTGCGCGAG
TTGGGCGAGC ACCCGGAGGC AGGCGGGCCT GTCAATATCA TGAAGGGCAA GTATGGCCCC
TACGTGAAAT GGGAGAAGAT CAACGCCACC ATCCCCAAGG AGACCGACCC CGAACAGGTC
ACCATGGAGA TGGCCGTGCA ACTGATCGAG GAACGCGCCG CCAAGTCCGG CAAGAAGGCC
CCCGCCAAGA AAAAGGCCGC GACCAAGAAG AAAACCGCCG CAAAGAAGAC CTCTGCGAAA
TAG
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| Protein sequence | MPVVVVESPA KAKTINKYLG SDFTVLASYG HVRDLPPKDG SVDPEHGFEM LWEIASDSRK
HVKAIADALK DDDTLILATD PDREGEAISW HLQEALTKRK AIKKSTDVSR VVFNAITKSA
VTEAMKNPRD VDMELVEAYL ARRALDYLVG FNLSPVLWRK LPGAKSAGRV QSVCLRLIVE
REMEIEAFDP REYWSVRAVL ETPRGQTYEA RLTELAGKKL DKFDLATAEA AELAVQAVTS
RKLSVTSVEA KPGTRNPSAP FMTSTLQQEA SRKFGFGARQ TMSTAQRLYE AGYITYMRTD
GIDMAPEAVT MARDAIKERF GAAYLPDSPR IYKNKAKNAQ EAHECIRPTE MSRAPEDLKV
TEPDQRKLYD LIWKRTLASQ MAAARLERTT VEIGSPDGQV ALRATGQVVV FDGFMKVYTE
GQDEESTAED ERRLPQIGQG DPAPLHKGGM EAAFAKAGSR EDDVVEAAPT GGMQQGPGGL
LSENGAVFGQ QHFTQPPPRY TEATLVKRME ELGIGRPSTY ASIVTTIQDR GYVTKDKNRL
IPEDKGRLVT AFLVNYFRKY VGYDFTADLE NQLDEVSAGD RNYKDVLDRF WRDFSAAIAE
TSELRITEVL EKINEVLAPH LFPPREDGKP PRLCPNCEIG QLSMRTARSG GAFIGCSNYP
ECRYTRPFGP PGMEEASGIP PEGKLLGEDG GDEIRVFKGR FGPYVQRGAV TEENKKPPRQ
SIPKSWVPEE LELDKAVMLL SLPRQIGLHP DDGVPVWANI GRYGPYLKHA DSTSDRGGTN
ANLEDIEEVW TVGMNRAVQL LAEKVASRGG RGAAAKPLRE LGEHPEAGGP VNIMKGKYGP
YVKWEKINAT IPKETDPEQV TMEMAVQLIE ERAAKSGKKA PAKKKAATKK KTAAKKTSAK
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