| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_1135 |
|---|
| Symbol | |
|---|
| ID | 5711103 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dinoroseobacter shibae DFL 12 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009952 |
|---|
| Strand | - |
|---|
| Start bp | 1160285 |
|---|
| End bp | 1161301 |
|---|
| Gene Length | 1017 bp |
|---|
| Protein Length | 338 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 641267046 |
|---|
| Product | putative signal transduction histidine kinase |
|---|
| Protein accession | YP_001532478 |
|---|
| Protein GI | 159043684 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG3920] Signal transduction histidine kinase |
|---|
| TIGRFAM ID | [TIGR00229] PAS domain S-box |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 0.177976 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 43 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAGCCAC GCACGCTAGG AACAGTGCTG GATGATCGGG AGGCGCTGGC CGGATTCTCG
CGCGCGCGGG TGGCCATGGT GCTGACCAAT CCCAACATCC ATGACAACCC GATTGTCTAT
GTGAACGACG CGTTCGAGCG GGTGACCGGT TATTCGCGCA CCGCGGCGAT CGGCCGGAAC
TGCCGGTTCC TGCAAGGCAG CATGACCGAC GATGCCGATG TTGCGAAGTT GCGCCGCGCG
ATCGAGCGCG AAGAGGACGT GACTGTCGAC ATCCTGAACT ACCGCGCGAG TGGCGAGCCG
TTCCTTAACC GACTGATCAT CGCGCCGGTC AAATCAGACG ACGGCAAATG TCACTATTTC
ATCGGCATCC AGAAGGCGAT GTCGGACCGC GATATCGACA GCTCCACACT GAGCATCGAG
AAACAACTCA ACGCCGTGCA GCGCCGGGTG CGCCAAGACC TGTCGATGCT GATCGACATC
ATCCGGGACC AGTCCAACCG GATGGGCTCG GAAGAAGGCT TCGCGGCCCT CGCCCGCCGG
ATCGAGTGCC TGCAGCTTCT TTATGAAGAG ATGCGCCTGT CGGACCGCGA CGCGCATCGG
CAGGGGATCT CAATGGGTAG CTACCTGACC CGGGTGGCCA ATGCGATCGC TCATTCCGAC
GGACGGCCGG GCGTGGCGTT CTCCATCGAG GTCGGCCGGT TCGAAGCCGA TCTGGAAACC
GCAACGCGGA CCGGGCTGAT CCTGTCGGAA GTGCTTACCA ACGCATTCCA GCATGCCTTT
GTCGGGCTCG ATGCGGGCAC CGTGCGGATG GAAGTGATCG CCCTGACCGA AGGCGGCTTC
CGAGTGGTGA TCTCCGACGA TGGCGTGGGC ATTCCCAAGG ATATGCCCGT GCCGGCGACG
CAGACCCTAG GCGGACGGAT CGCGACCGAG TTGATCGACA GCCTCGAAGG CACCCTGAAT
TATGTCCGCG GCGCAGCCGG AACCGTCGTG ATTATCGACG TGCCCGCGGG CAATTGA
|
|---|
| Protein sequence | MKPRTLGTVL DDREALAGFS RARVAMVLTN PNIHDNPIVY VNDAFERVTG YSRTAAIGRN
CRFLQGSMTD DADVAKLRRA IEREEDVTVD ILNYRASGEP FLNRLIIAPV KSDDGKCHYF
IGIQKAMSDR DIDSSTLSIE KQLNAVQRRV RQDLSMLIDI IRDQSNRMGS EEGFAALARR
IECLQLLYEE MRLSDRDAHR QGISMGSYLT RVANAIAHSD GRPGVAFSIE VGRFEADLET
ATRTGLILSE VLTNAFQHAF VGLDAGTVRM EVIALTEGGF RVVISDDGVG IPKDMPVPAT
QTLGGRIATE LIDSLEGTLN YVRGAAGTVV IIDVPAGN
|
|---|
| |