| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_1130 |
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| Symbol | |
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| ID | 5711098 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dinoroseobacter shibae DFL 12 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009952 |
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| Strand | - |
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| Start bp | 1156688 |
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| End bp | 1157530 |
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| Gene Length | 843 bp |
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| Protein Length | 280 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 641267041 |
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| Product | SAF domain protein |
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| Protein accession | YP_001532473 |
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| Protein GI | 159043679 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG3745] Flp pilus assembly protein CpaB |
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| TIGRFAM ID | [TIGR03177] Flp pilus assembly protein CpaB |
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Plasmid Coverage information |
| Num covering plasmid clones | 32 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 41 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCGTTTGG TTTTTGGACT GGTATTGCTC CTCGGGGTCG GCCTGGCCGG CTTTGCGGTG
ATGATGGCAA AAGACAGGTT TGACCAGTAT CAGACCGTTG TCGCCAAACA GCAGCAGAAA
CTCGCGGCCG CAGTGGACGT GGTCGAGGTC TATGTCATGG ATACACCGAT CCGCTACGGC
GAGAAGATCG GCAAGGATGA CGTGCGCAAG GTCCGTTGGC CCGCGGACGC GTTGCCCGAA
GGCGCGTTCC AGACCGAGGA AGGCCTGTTC CCGGATGCCG AGGGCCGGTT GCGCACGGCC
ACCCGCGCCA TGGAAGCCAA TGAGCCGGTC CTTGCGGTGA AGGTCACCGA ACCCGGCCAG
GATGCGGGTG TTTCGTCCCG TCTCGGCAAG GGCATGCGGG CCTTCGCCAT CAGCGTCACG
GTCACCTCGG GCGTCTCCGG CTTCTTGCGG CCTGGCGACC GGGTCGACGT CTACTGGAGC
GGCTCGTCCA AGGGACAAGA CGTCACCAAG CTGATCCAGT CCAGCATGCA GATCATCGGC
ATCGACCAGA ACGCCGATAT GGACCGCACC GCCCCGACCA TTGCGCGCAC CGTCACCGTG
GAGGCCACGC CGCAGCAAGT CGCAGGTCTC GCCCAGGCGC AGCGTACCGG CAGCCTGTCC
CTGTCGCTGG TGGGGGCCGC CGACGATGCC TTTGTTGGCA ATATCGAAGT CAACCAGGAC
GAACTGCTCG GCATCGTGGA AGAGGAAGAA GTCATCGAAC GCGCGGAGGT CAAGGAAGTC
TGTACGATCC GCACCCGCCG CGGGTCCGAA GTGGTCGAAA TCCCGATCCC CTGCACCAAC
TGA
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| Protein sequence | MRLVFGLVLL LGVGLAGFAV MMAKDRFDQY QTVVAKQQQK LAAAVDVVEV YVMDTPIRYG
EKIGKDDVRK VRWPADALPE GAFQTEEGLF PDAEGRLRTA TRAMEANEPV LAVKVTEPGQ
DAGVSSRLGK GMRAFAISVT VTSGVSGFLR PGDRVDVYWS GSSKGQDVTK LIQSSMQIIG
IDQNADMDRT APTIARTVTV EATPQQVAGL AQAQRTGSLS LSLVGAADDA FVGNIEVNQD
ELLGIVEEEE VIERAEVKEV CTIRTRRGSE VVEIPIPCTN
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