| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_1129 |
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| Symbol | |
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| ID | 5711097 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dinoroseobacter shibae DFL 12 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009952 |
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| Strand | - |
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| Start bp | 1155070 |
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| End bp | 1156494 |
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| Gene Length | 1425 bp |
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| Protein Length | 474 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 641267040 |
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| Product | type II and III secretion system protein |
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| Protein accession | YP_001532472 |
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| Protein GI | 159043678 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG4964] Flp pilus assembly protein, secretin CpaC |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 23 |
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| Plasmid unclonability p-value | 0.765112 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 41 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACAATGA GACTTTGGGT GACCGCGGGG CTTCTGGGCC TTGCTCTTGG CGCATCGATT
GGTACCGCTC CGGCCATGGC GCAGGTCTTG CGCGTGCAGG AGGGCCAAGC AGATTCGACC
TTGCAAGTGC CCATGAACCG CGCGGTCGTG GTCGAAAGCG ACATTCCTTT CGCTGAACTC
TCCGTTGCAA ATCCGGGCAT AGCAGACATC GCCACCCTGT CGGATCGCAG CATCTATGTT
CTGGGCAAAT CCCAGGGGCG CACCACCATG ACCCTGCTCG GCGCGGATGG ACGGCTGATC
ACGAACGTGG ACGTTCAAGT CACGCCGGAT ATCGCCGAGT TCAAGGAGCG GCTGGAGCAG
ATCCTGCCCG GCGAGAACAT CGAAGTACGC ACCGCAAACG ATGGCGTGGT TCTGAGCGGA
ACAGCCTCCA GCGTCACCGC GATGGATCGC GCCCTGGACC TCGCGCAGCG CTACGCGCCG
GACCGGGTGT CCAACCTGAT GAGCATCGGC GGCAGTCAGC AGGTCATGCT GAAAGTGCGG
TTCGCGGAAA TGCAGCGCTC GGTCAGCAAG CAGCTTTCCG GCGGCCTTAC GGCGATCTAC
AGCGGCACTG ATGGCGCATT CTCCGTTGGC CTTGGCTCCG GCGGATTGAC CGATGGCGGC
TCGATCGGCG GCGCCAATTC GACCGAATTC ACCCTTAACC CCGAGGCGGC GGGCACCATC
GGACTCGGTT TCAACATCGG GAATGTAAGC CTCGGCATTC TTCTGGAGGC CCTTGAAAGC
AAAGGGGTCG TCCGTACCTT GGCCGAGCCG AACCTGACCA CCCTGTCCGG GCAGGAAGCC
TCGTTCCTGG CGGGCGGAGA ATATCCGATC CCGGTGGCCG ATGGCGATGG CGGGATCTCG
GTGGAATACA AGCCCTTCGG CGTGGAACTG GATTTCATTC CGACCGTGCT GGACGACGAC
GTGATCAACC TGGAGTTGGG GGCTGCGGTG TCGGCGCTCG ATTCCAGTGC CTCGATCATC
ACCGATTCGC TGACCGTGCA GGGTTTCAGC CGCCGCGAAA CCCTGACCAC CGTGCAACTG
CGCGACGGTG ACAGCTTCGC CATCGCCGGG CTGCTTGAAG ACGATTTCCG GGATTTCGCG
GGGCAAGTGC CGTGGCTCGG AGATATCCCC GTGCTAGGTG CCCTCTTTCG CAGCGCCGAC
TACGCCCGGA GCCAGTCGGA ATTGGTCATC ATCGTGACCG CGCACTTGGT CTCACCCACC
CGTGGCGAAG CCCTTGTGCT GCCAACCGAC CGGGTCCGCA TCCCCAGTGA GCGGGAATTC
TTCCTCAACG GCAATCTCGT ACGGGAGGAT ACACCCCGCC GCGGCGCTGC CGGAGAAGTC
GCGCAGCAGG ATTTCTCCGG ATCCTACGGC TATGTTTTGG AGTAA
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| Protein sequence | MTMRLWVTAG LLGLALGASI GTAPAMAQVL RVQEGQADST LQVPMNRAVV VESDIPFAEL
SVANPGIADI ATLSDRSIYV LGKSQGRTTM TLLGADGRLI TNVDVQVTPD IAEFKERLEQ
ILPGENIEVR TANDGVVLSG TASSVTAMDR ALDLAQRYAP DRVSNLMSIG GSQQVMLKVR
FAEMQRSVSK QLSGGLTAIY SGTDGAFSVG LGSGGLTDGG SIGGANSTEF TLNPEAAGTI
GLGFNIGNVS LGILLEALES KGVVRTLAEP NLTTLSGQEA SFLAGGEYPI PVADGDGGIS
VEYKPFGVEL DFIPTVLDDD VINLELGAAV SALDSSASII TDSLTVQGFS RRETLTTVQL
RDGDSFAIAG LLEDDFRDFA GQVPWLGDIP VLGALFRSAD YARSQSELVI IVTAHLVSPT
RGEALVLPTD RVRIPSEREF FLNGNLVRED TPRRGAAGEV AQQDFSGSYG YVLE
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