| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_1126 |
|---|
| Symbol | |
|---|
| ID | 5711094 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dinoroseobacter shibae DFL 12 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009952 |
|---|
| Strand | - |
|---|
| Start bp | 1151449 |
|---|
| End bp | 1152903 |
|---|
| Gene Length | 1455 bp |
|---|
| Protein Length | 484 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 641267037 |
|---|
| Product | type II secretion system protein E |
|---|
| Protein accession | YP_001532469 |
|---|
| Protein GI | 159043675 |
|---|
| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG4962] Flp pilus assembly protein, ATPase CpaF |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 0.188659 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 37 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGTTTGCCA AGTACCGAAA AGACGCGCCG GCAAAGCCAC GCCCTCCTGC GATCGCGGCG
GGCGCAATCG CGACCGAGCC CGCGCCAGGC TCGGGTCCGG AGACGGCCAA GCCCAAGATG
CGTCCGAAGC CCAAGCCCGA AACAGCCCCC GCCACGCCGG AAGCTCAGGA CAAGGAAGCC
CGGCGCCAGC AGAAGCTGAA CGAGCTCAAG GTGACCCTGC ACAAACAGCT GCTCGAAGAA
CTGAACCTGT CGGCACTGGA AAGCGCGAGC GAGAAAGAAC TGCGCGCAGA GATCGCCCAG
ATCGTCACCG AATCGCTCGC AACCCTGAGC GTCGCCCTGA ACAAGGACGA ACGCCGCACC
CTTTATGAAG AGCTTTACGA CGAAGTGCGC GGTCTCGGCC CGCTCGAGCC CTTGCTGAAG
GACGAGGATG TCAACGACAT CCTGGTGAAC GGACCGCACC GCGTCTTCAT TGAAAAGGCG
GGCAAACTTC AGCTTTCAGA CGTAAAATTC CGGGACGAGA AACATCTGCT CCGGATCATC
GACAAGATCG TCTCCGCCGT GGGGCGGCGT GTTGATGAAC AGAACCCCTA TGTCGACGCG
CGCCTCGCGG ACGGCTCGCG GTTCAACGCC ATGGTCGGGC CGATTGCCTG CGACGGAAGC
CTGGTGTCGA TCCGGAAGTT CAAGAAGGAC AAGCTGGGAA TTGATGAGCT GGTCAATTTC
GGCGCCTTTT CGGAGGAAAT GGCGGTCTAT CTGCAAGCCG CCGTCGCGTG TCGGCTGAAC
GTGATCGTGT CCGGCGGGAC GGGTTCGGGC AAGACGACCA CGCTAAATGC CCTGAGTTCC
TTCATCGACA ATTCCGAACG TATCCTGACC ATCGAGGATA CCGCGGAACT CCAGTTGCAG
CAGGTGCATG TGGGCCGGAT GGAAAGCCGG CCCGCGAATG TTGAGGGCAA GGGCGCCGTG
ACCCAGCGTG ACTGTCTGCG CAACGCCCTG CGGATGCGCC CGGACCGGAT CATCGTGGGC
GAGACCCGTG GCGAGGAGGT GATCGACATG CTCCAGGCCA TGAATACCGG CCATGACGGG
TCGATGACCA CGATCCACGC AAACTCCGCC CGGGACGGGG TCAGTCGACT GGAAAACATG
GTGGCCATGG CCGGGATCGA GATGCCCATC CGGGCTTTGC GGGCACAGAT CTCCTCGGCC
GTGAACCTGA TCGTGCAGGC CTCGCGCCTG CAGGACGGAT CGCGCCGGAT GGTGTCGATC
ACCGAGATCA CCGGGATGGA GGGGGACATC ATCTCCATGC AGGAGGTGTT CAGATACCAG
CGCACAGGTC TGCTGCCCGA CGGCAAGATC AAGGGTCACT TCACTGCAAC CGGCGTGCGC
TCGCACTACT CGGAGCGCTT CAAGCAATGG GGCTATGACA TTCCGGCTTC GATCTACGAG
CCGACAAAGG AATAG
|
|---|
| Protein sequence | MFAKYRKDAP AKPRPPAIAA GAIATEPAPG SGPETAKPKM RPKPKPETAP ATPEAQDKEA
RRQQKLNELK VTLHKQLLEE LNLSALESAS EKELRAEIAQ IVTESLATLS VALNKDERRT
LYEELYDEVR GLGPLEPLLK DEDVNDILVN GPHRVFIEKA GKLQLSDVKF RDEKHLLRII
DKIVSAVGRR VDEQNPYVDA RLADGSRFNA MVGPIACDGS LVSIRKFKKD KLGIDELVNF
GAFSEEMAVY LQAAVACRLN VIVSGGTGSG KTTTLNALSS FIDNSERILT IEDTAELQLQ
QVHVGRMESR PANVEGKGAV TQRDCLRNAL RMRPDRIIVG ETRGEEVIDM LQAMNTGHDG
SMTTIHANSA RDGVSRLENM VAMAGIEMPI RALRAQISSA VNLIVQASRL QDGSRRMVSI
TEITGMEGDI ISMQEVFRYQ RTGLLPDGKI KGHFTATGVR SHYSERFKQW GYDIPASIYE
PTKE
|
|---|
| |