| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_1119 |
|---|
| Symbol | |
|---|
| ID | 5711087 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dinoroseobacter shibae DFL 12 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009952 |
|---|
| Strand | - |
|---|
| Start bp | 1143663 |
|---|
| End bp | 1146086 |
|---|
| Gene Length | 2424 bp |
|---|
| Protein Length | 807 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 641267030 |
|---|
| Product | DEAD/H associated domain protein |
|---|
| Protein accession | YP_001532462 |
|---|
| Protein GI | 159043668 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG1201] Lhr-like helicases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 25 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 34 |
|---|
| Fosmid unclonability p-value | 0.913802 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCCCGCTG CCCCGCCCCC TTCCCTGCCC AACGAAATCA CGCGCTGGAT CGCCGCCCAG
GGTTGGGCGC TCCACCCCCA TCAACGCGAG ATGCTGGCCC GGTCTCAGGA TCCCGCGCTT
CTGCTCATCG CGCCCACGGG GGGCGGCAAG ACTTTGGCCG GATTCCTGCC GACATTGGCC
GAGCTTGGCC CCGCCCCCCC GCCCGGACTG CATACCTTGT ACATCTCGCC GCTCAAGGCG
CTCGCGGCGG ACATCAAACG CAACCTGCGC CGCCCGATCG AGGAGGCCGG TCTGGCCATC
CGGGTCGAGG ACCGCACCGG TGACACCAGC CAGACCCAGC GCAAGCGGCA GCGCGCCGAC
CCGCCCCATA TCCTGCTGAC AACGCCGGAA AGCCTCGCGC TCATGCTCAG CTACGAGGAT
GCGGCGCGCA CCTTCGCCGG GGTGCAGCGC GTGATCGTGG ACGAGATCCA CGCGCTCGCC
GAGTCCAAGC GCGGCGACCA GTTGATGCTG GGCCTCGCGC GGCTGCAATC GCTGGTCCCA
GGCCTGCGTC GGGTCGGACT GTCGGCGACG GTAGAGGACC CGCCGGCCAT CGCCCGATTT
CTCGCACGGC ATCCCGATCC GTGCGACATC CTGCTCGCCG ACCCCGGCCC TGCACCCGAC
ATAACCATGC TGCAAACCGA CGAGGCCCCA CCCTGGAGCG GCGGCGGCGG ACGCTATGCC
ATTCCGGCGA TCCTGCAGGC GGTCAAGGCG CACAAGACCA CGCTGATCTT TCACAACACC
CGCGCCCAGG CGGAGCTGTT CTTCCACGCG CTCTGGCTCG CCAACGAGGA TGCGCTGCCC
ATTGGCATTC ACCACGGATC GCTCTCGCGC GAGCAACGCC AGCGAGTCGA GGCCGCCATG
GCCGAGGGCG CGCTGCGGGC GATCGTCTGC ACCGGTTCTC TCGATCTCGG GATCGACTGG
GGCGATGTGG ACCTCGTGAT CCAGGTCGGC GCGCCTAAGA ACGTCAAGCG GCTGGTGCAG
CGGATCGGCC GCGCCAATCA CCGCTACAAC GCGCCCTCCA AGGCGCTGCT GGTGCCCGCC
AACCGGTTCG AGGTCGTGGA ATGCCATGCG GCGCTGAAAA CCATGGCGGA CGGCAAGCTC
GACGGGGAGC CGCGCGCCGA AGGGCCGCGC GATGTTCTGT GCCAGCATAT CCTCGCCGTG
GCGGCGGCGG GGCCGTTCGA TGCCGATGCC CTGTTTGCCG AGGTCACGAG CGCAGGCGCT
TATCGCGACC TGACCCGCCC CGCCTTCGAC GATTGCCTCG AATTCTGCGC CACGGGGGGC
TACGCCCTGC GCGCCTATGA CCGCTGGCAG CGGCTGCTGC ACCGCCCGGA CGGGATGTGG
CAGTTGCGTG ACCCCCGTGC CGCGCGCCAG ATCCGAATGA ATATCGGCAC GATTATCGAC
ACCGAAACCC TCAAGGTCAG GCTCAAGAAC CGGCGCGGCG GCACGCCCCT CGGCGAGGTC
GAGGAAGGCT TCGCCGCCAC CCTGACCCCT GGCGACACCT TCCTGATCGG CGGGCAGATC
GTTCGCTACG AAGGATTGAA CGAGTTGACG GTCGAGGTCA CCCGCCGGGC GGACAAGCAG
CCCAAGATCG CCACCTTCAT GGGCACGAAA TTCGCCACCT CCACCCAGCT CAGCCACACC
ATCCTCGAGA TGTTCCGCCA ACCTGACTGG CCCGAACTGC CCTCGGCGAC CTGCGAATGG
CTGCACCTGC AACGCAAGGT CTCCAAACTG CCAGAGGCCG ACCGGATGCT GATGGAAACC
TTCGGTCATG AGGACCGGCA GTACCTTGTG TGCTACGGCT TCGCGGGCCG GAACGCTCAG
CAGACGCTGG GCCTGCTGCT GAGCCAGCGG ATGGAGCTGG CCGGGCTCGC CCCCATCGGC
TTCGTTGCGA CGGATTACGC CACCATGCTC TGGGGGCTCG AAGAGGTCCG CGATCCCGCC
GCGCTCGTGC GGCCCGACGG GTTGCGCGAC AGTTTCGAGC AGTGGCTCTC CGGCAACGCG
GTGATGAAGC GCACCTTCCG CGCCGCCGCG ATCATCGCCG GGCTGATCGA CCGCAACACA
CCCGGGCGGC GCAAGACCGG GCGACAGGCG ACGTTTTCCT CCGACATCCT TTACGACACC
TTGCTGAAAT ACGATCCCGA CCACGTGCTG ATGCAGATCA CCCGCGAAGA GGCCCGGCGC
GGCCTCGTGG ATTTCGGCCG GATCGAGGAG CTTCTCGCGC GTACCACGGG TCGCGTGGAC
CATCGCCGAC TCGACCGGAT CAGCCCGCTG GCGGCGCCGC TGCTGCTGGA ACGCGGCACG
GTGCCCGTGG CCGGCGCAGC GGAGGATCGC CTGCTCGCCC AGGCCGCCGA GGCCCTGATG
CAGGAGGCCG GCCTGCCCGC CTGA
|
|---|
| Protein sequence | MPAAPPPSLP NEITRWIAAQ GWALHPHQRE MLARSQDPAL LLIAPTGGGK TLAGFLPTLA
ELGPAPPPGL HTLYISPLKA LAADIKRNLR RPIEEAGLAI RVEDRTGDTS QTQRKRQRAD
PPHILLTTPE SLALMLSYED AARTFAGVQR VIVDEIHALA ESKRGDQLML GLARLQSLVP
GLRRVGLSAT VEDPPAIARF LARHPDPCDI LLADPGPAPD ITMLQTDEAP PWSGGGGRYA
IPAILQAVKA HKTTLIFHNT RAQAELFFHA LWLANEDALP IGIHHGSLSR EQRQRVEAAM
AEGALRAIVC TGSLDLGIDW GDVDLVIQVG APKNVKRLVQ RIGRANHRYN APSKALLVPA
NRFEVVECHA ALKTMADGKL DGEPRAEGPR DVLCQHILAV AAAGPFDADA LFAEVTSAGA
YRDLTRPAFD DCLEFCATGG YALRAYDRWQ RLLHRPDGMW QLRDPRAARQ IRMNIGTIID
TETLKVRLKN RRGGTPLGEV EEGFAATLTP GDTFLIGGQI VRYEGLNELT VEVTRRADKQ
PKIATFMGTK FATSTQLSHT ILEMFRQPDW PELPSATCEW LHLQRKVSKL PEADRMLMET
FGHEDRQYLV CYGFAGRNAQ QTLGLLLSQR MELAGLAPIG FVATDYATML WGLEEVRDPA
ALVRPDGLRD SFEQWLSGNA VMKRTFRAAA IIAGLIDRNT PGRRKTGRQA TFSSDILYDT
LLKYDPDHVL MQITREEARR GLVDFGRIEE LLARTTGRVD HRRLDRISPL AAPLLLERGT
VPVAGAAEDR LLAQAAEALM QEAGLPA
|
|---|
| |