Gene Dshi_1112 details

Gene Information

• Locus tag: Dshi_1112
• Symbol: pal
• ID: 5711080
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Dinoroseobacter shibae DFL 12
• Kingdom: Bacteria
• Replicon accession: NC_009952
• Strand: +
• Start bp: 1137066
• End bp: 1137593
• Gene Length: 528 bp
• Protein Length: 175 aa
• Translation table: 11
• GC content: 69%
• IMG OID: 641267023
• Product: peptidoglycan-associated lipoprotein
• Protein accession: YP_001532455
• Protein GI: 159043661
• COG category: [M] Cell wall/membrane/envelope biogenesis
• COG ID: [COG2885] Outer membrane protein and related peptidoglycan-associated (lipo)proteins
• TIGRFAM ID: [TIGR02802] peptidoglycan-associated lipoprotein

Plasmid Coverage information

• Num covering plasmid clones: 24
• Plasmid unclonability p-value: 0.248876
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: 32
• Fosmid unclonability p-value: 0.324066
• Fosmid Hitchhiker: No
• Fosmid clonability: normal

Sequence

Gene sequence

ATGACACATT TTCACACTTC GCGGCTGCGT GCGCCCCTGG CGCTGATCGT GGCGCTGGCG 
CTCTCGGGCT GTGCGGGTTC GGGCGGGCTG TTCGGCGGCG GCGCGGGCGG CGGCACGGCC 
GGCAGCGGAG CCTTGAGTTC GGGCGATTTC GGGGACCCGA CCTCGCCGGC CTATTTCCAG 
CAGGCCATCG GTGACCGGGT TCTGTTCGCG GTCGACCAGA GCACCTTGAG CGGCGAGGCG 
CAGCAGGTCG TGTCCCAGCA AGCCCGGTGG CTGATGGATA ACGGGGCCTA CACCGCCGTG 
ATCGAAGGTC ATGCGGACGA ACAGGGCACG CAGGAATACA ACCTCGCCCT CGGCGCGCGC 
CGGGCCAGTG CCGTGCGCGA CTTCATGGTC TCGCAAGGGG TGGCCGACAA CCGGCTGAGC 
ACGGTGACCT TTGGCAAGGA GCGCCCGATC GAGGTCTGCT CCGAAGAGCG GTGCTATGCC 
CAGAACCGCC GCGCGGTCAC GGTGCTGAGC GCCGCGCCCG GATCCTGA 

 

Protein sequence

MTHFHTSRLR APLALIVALA LSGCAGSGGL FGGGAGGGTA GSGALSSGDF GDPTSPAYFQ 
QAIGDRVLFA VDQSTLSGEA QQVVSQQARW LMDNGAYTAV IEGHADEQGT QEYNLALGAR 
RASAVRDFMV SQGVADNRLS TVTFGKERPI EVCSEERCYA QNRRAVTVLS AAPGS