Gene Dshi_1107 details

Gene Information

• Locus tag: Dshi_1107
• ID: 5711075
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Dinoroseobacter shibae DFL 12
• Kingdom: Bacteria
• Replicon accession: NC_009952
• Strand: +
• Start bp: 1132927
• End bp: 1133337
• Gene Length: 411 bp
• Protein Length: 136 aa
• Translation table: 11
• GC content: 65%
• IMG OID: 641267018
• Product: Pol-Pal system-associated acyl-CoA thioesterase
• Protein accession: YP_001532450
• Protein GI: 159043656
• COG category: [R] General function prediction only
• COG ID: [COG0824] Predicted thioesterase
• TIGRFAM ID: [TIGR00051] acyl-CoA thioester hydrolase, YbgC/YbaW family; [TIGR02799] tol-pal system-associated acyl-CoA thioesterase

Plasmid Coverage information

• Num covering plasmid clones: 18
• Plasmid unclonability p-value: 0.0129163
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: 35
• Fosmid unclonability p-value: 0.667766
• Fosmid Hitchhiker: No
• Fosmid clonability: normal

Sequence

Gene sequence

ATGAGCGTCC ATCGCTTCGA TCTGCGGGTC TATTACGAGG ATACCGACCT TGCGGGCATC 
GTCTATTATG CCAACTACCT GAAGTTCATC GAGCGTGGGC GCAGCGAGTA TCTGCGCGCC 
CTCGGCATCG ACCAGACCGC CCTGCGCGAC ACATCGGGCG TGGTCTTTGC CGTGCGCCGG 
GTGGAGGCGG ACTACCTGCG TCCGGCAGTC TTTGACGATC ACCTGTGCGT GACCACCGCG 
CCCCGTCAGG TCACCGGGGC GCGCATCGTG CTCGACCAGG GGGTGCTGCG CGGCGAAGAG 
GTGCTGTTTT CTGCCTTGGT GACAATCGTT TGCCTGTCGG GCACGGGGCG GCCTGCGCGA 
ATGCCACGTG AGGTTGTCGC GGCCTTCGGG GCAGAGGCGA AAACGCGCTA G 

 

Protein sequence

MSVHRFDLRV YYEDTDLAGI VYYANYLKFI ERGRSEYLRA LGIDQTALRD TSGVVFAVRR 
VEADYLRPAV FDDHLCVTTA PRQVTGARIV LDQGVLRGEE VLFSALVTIV CLSGTGRPAR 
MPREVVAAFG AEAKTR