| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_1105 |
|---|
| Symbol | ruvB |
|---|
| ID | 5711073 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dinoroseobacter shibae DFL 12 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009952 |
|---|
| Strand | + |
|---|
| Start bp | 1131167 |
|---|
| End bp | 1132240 |
|---|
| Gene Length | 1074 bp |
|---|
| Protein Length | 357 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 70% |
|---|
| IMG OID | 641267016 |
|---|
| Product | Holliday junction DNA helicase RuvB |
|---|
| Protein accession | YP_001532448 |
|---|
| Protein GI | 159043654 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG2255] Holliday junction resolvasome, helicase subunit |
|---|
| TIGRFAM ID | [TIGR00635] Holliday junction DNA helicase, RuvB subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 0.0530572 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 34 |
|---|
| Fosmid unclonability p-value | 0.598113 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCAGAGCG ATCCGACCTT GCGCCCCGAG CCCTTGCCGG ACGAGCGCGA CGGGGCCGAC
CGGGCCTTGC GGCCGCAATC CCTCGACGCG TTCATCGGGC AGGCGGAGGC GCGCGCTAAC
CTGCGGGTTT TCGTCGAGAG CGCCCGCCGC CGGGGCGAGG CCATGGATCA TGTGCTGTTT
CACGGCCCGC CGGGTCTGGG CAAGACCACC CTGGCGCAGA TCATGGCGCG CGAACTCGGC
GTCAATTTCC GCATGACCTC TGGTCCGGTC CTGGCCAAGG CGGGGGATCT GGCGGCGTTG
TTGACCAACC TGGAGGCGCG CGACGTTCTC TTCATCGACG AGATCCACCG GCTGAACCCG
GTGGTGGAGG AGGTGCTTTA TCCCGCGCTG GAGGATTTCG AGCTCGATCT GGTGATCGGC
GAGGGACCTG CGGCGCGGAC GGTGCGGATC GAATTGCAGC CTTTCACCTT GGTGGGGGCG
ACCACGCGGC TGGGGCTGCT GACCACGCCC CTCAGGGACC GGTTCGGCAT TCCGGTGCGG
TTGCAGTTCT ATTCGGCCGA GGAGTTGGAG CAGATCGTGG CGCGGGGGGC GCGGATGCTC
GATGTGCCGG CCGAGCCGTC GGGGATCGCC GAGATTGCCC GCCGCGCCCG GGGCACGCCG
CGCATTGCCG GGCGGCTGTT GCGGCGGGTG GTGGATTTTG CCCTGGTCGA AGGCGATGGC
ACGATCACCC GTGCGGTGGC TGATGGCGCG CTGACGCGGC TGGGCGTGGA CCGCGCGGGG
CTCGATGGGG GGGACCGGCG CTACCTGAGC CTGCTGGCGG ACAATTACGG CGGCGGCCCG
GTGGGGATCG AGACGATCTC GGCGGCGCTG TCGGAGGCGC GCGACGCGGT CGAGGAGGTG
ATCGAGCCCT ACCTGTTGCA GCAGGGGTTC CTGCAGCGCA CGCCGCGGGG CCGGATGCTG
GCGCGCAAGG CCTGGGCGCA TCTGGGACTG GAGCCGCCCC GGGCACCTGG CGGCGCACCG
CAGAGCGATC TGTTCGAAGG TCCCCCCGCG GAAGGGCCGC CGACGGAGAT TTGA
|
|---|
| Protein sequence | MQSDPTLRPE PLPDERDGAD RALRPQSLDA FIGQAEARAN LRVFVESARR RGEAMDHVLF
HGPPGLGKTT LAQIMARELG VNFRMTSGPV LAKAGDLAAL LTNLEARDVL FIDEIHRLNP
VVEEVLYPAL EDFELDLVIG EGPAARTVRI ELQPFTLVGA TTRLGLLTTP LRDRFGIPVR
LQFYSAEELE QIVARGARML DVPAEPSGIA EIARRARGTP RIAGRLLRRV VDFALVEGDG
TITRAVADGA LTRLGVDRAG LDGGDRRYLS LLADNYGGGP VGIETISAAL SEARDAVEEV
IEPYLLQQGF LQRTPRGRML ARKAWAHLGL EPPRAPGGAP QSDLFEGPPA EGPPTEI
|
|---|
| |