| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_1080 |
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| Symbol | |
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| ID | 5711048 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dinoroseobacter shibae DFL 12 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009952 |
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| Strand | + |
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| Start bp | 1107811 |
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| End bp | 1109568 |
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| Gene Length | 1758 bp |
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| Protein Length | 585 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 641266991 |
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| Product | integral membrane sensor signal transduction histidine kinase |
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| Protein accession | YP_001532423 |
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| Protein GI | 159043629 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG4191] Signal transduction histidine kinase regulating C4-dicarboxylate transport system |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 21 |
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| Plasmid unclonability p-value | 0.572324 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 34 |
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| Fosmid unclonability p-value | 0.76853 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCGGAGC CGCGCGTCGA TCCTTCGAGT GCCTTGTCCC GTGCCAATAT GGTGGCGCGC
AGCGTTGCCG TGGTCTTGGC GCTGGTCGCG GTCGCGGTGG TCTGGGTCAC GAACATCTGG
CTGACCGACC GCTTCACCGA GACGACGCGC AACCGGGCCG AGCTGCGCCT GTCGCTCTAT
TCCAATGCTA TCGTGTCGGA GTTGCAGCGC AATTCGGTGG TGCCGCTGCT GTTGTCGCGG
GACCCGGTCA TCATCAGCGC CCTGAGCAAT GATGACCATC TCGCCACGTC GCAGCGCCTG
ATCTCGCTGC GCGAGGAGAT CGGCGCGGCC TCGATGCAGC TTCTGAACGA GTCCGGGCGC
ACGGTGGCGG CCACTGATCG CACGAAACTG GGCACCCAGC ATCGCAACGC ACCCTATTTC
GTCGAAGCCC TGCGCGCCAA CGGGACGGTG TTCACGATTA CCGAGACCGA GTCCGGGCGG
CTGGATTTCG CCTTCTCGCG CCTGATCGAG TTCGATCAGC GCGTGCTCGG CGTGATGGTG
GTGGAGGTCG ATCTGCGCAA GCTGGAGACG CGCTGGTCCG GCGGGTCGGA TGCGATCATG
GTCACCGACA GCGCGGGCAA GGTGATCCTG GCGACCGAGC CGCGCTGGCG GAGCCGCACG
CTGACCGAGG CGCTGGATGC GCAATCGGCG CCCACGGCGA TCTCGCGCGC GATCCAGGCC
ACGGGCGAAT GGACCGGGCG CGCGCCGGAG ACGTACCTGT TGGGCGAGGC GGTGCTGGAG
CTGGAGATGC TCGTGCCGTT CCGGGGCTGG CGGCTCTATT CCTTCGTCAC CTATTCCTCG
GTGCGGGAGC GGGTGAACGC GGTTCTCGCG CTGGAGATCA TGACCTTCGC CATCCTGATC
GCGCTCGGCT TTTACCTGCT GAGTCGCCGG GCGGTGTCGA CCTCGGCGAT CTTCCAGCGG
GAGTCGGCAG AACTTCGCCT TCTGAACGAG CGGCTGCAGC AGGAAATCGC CGAACGGGAG
CGGGTGGAGA AGACCCTGGA GCAGGCCGAA CAGACCCTCG CGCAGAGCCA AAAGCTCGCC
GCGCTGGGGG AGATGTCGGC CGCGGTCAGC CACGAGTTGA ACCAGCCGCT GGCGGCGATG
AAGACCTATC TGGCGGGCGC GCGGCTGTTG TTGCAGCGCA AGCGGCCGGA CGAGTCGCTG
AGCTCTTTCG CCCGGATCGA CGATCTGATC GACCGGATGG GCAAGATCAC GCGGCAGCTG
AAGTCCTTTG CGCGCAAGGG CGAGGATGCG TTCCAGATCG TGGATCTGCG CGAGGCGCTC
TCGGCGGCGC TGGCGATCAT GGAGCCGCAG ATCAAGCAAG AGTTTGTAAA GATTGAAAGA
AATATGCCCA AACAGCCGGT TCTGGTGATG GGGGACCGGA TCCGGCTGGA ACAGGTGATC
GTCAACCTGC TGCGCAATGC GATGGATGCC ACGGCCGGCA CGCCCAACCC GGTGGTCGAG
ATCGACCTGA CCACGGGCGA GACCGCGCGG CTGTCGGTGC GCGACAACGG TCCGGGCATC
ACGGATTTCG AGCAGATCTT CGAGCCGTTC TACACCACCA AGCGGCCGGG CGACGGGGTC
GGGCTGGGCC TTGCCATTTC CTCGGGGATC GTGTCGGACC ACGGGGGGCG GTTGATGGCG
CGCAACCGGA CCTCGCGCGG GGCGGTGTTC GAGATGCGAT TACCCCTCTG GACGGCGGAC
AGCCAAGCCG CAGAATAG
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| Protein sequence | MAEPRVDPSS ALSRANMVAR SVAVVLALVA VAVVWVTNIW LTDRFTETTR NRAELRLSLY
SNAIVSELQR NSVVPLLLSR DPVIISALSN DDHLATSQRL ISLREEIGAA SMQLLNESGR
TVAATDRTKL GTQHRNAPYF VEALRANGTV FTITETESGR LDFAFSRLIE FDQRVLGVMV
VEVDLRKLET RWSGGSDAIM VTDSAGKVIL ATEPRWRSRT LTEALDAQSA PTAISRAIQA
TGEWTGRAPE TYLLGEAVLE LEMLVPFRGW RLYSFVTYSS VRERVNAVLA LEIMTFAILI
ALGFYLLSRR AVSTSAIFQR ESAELRLLNE RLQQEIAERE RVEKTLEQAE QTLAQSQKLA
ALGEMSAAVS HELNQPLAAM KTYLAGARLL LQRKRPDESL SSFARIDDLI DRMGKITRQL
KSFARKGEDA FQIVDLREAL SAALAIMEPQ IKQEFVKIER NMPKQPVLVM GDRIRLEQVI
VNLLRNAMDA TAGTPNPVVE IDLTTGETAR LSVRDNGPGI TDFEQIFEPF YTTKRPGDGV
GLGLAISSGI VSDHGGRLMA RNRTSRGAVF EMRLPLWTAD SQAAE
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