Gene Dshi_1045 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDshi_1045 
Symbol 
ID5711013 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDinoroseobacter shibae DFL 12 
KingdomBacteria 
Replicon accessionNC_009952 
Strand
Start bp1079051 
End bp1079896 
Gene Length846 bp 
Protein Length281 aa 
Translation table11 
GC content74% 
IMG OID641266956 
ProductHpcH/HpaI aldolase 
Protein accessionYP_001532388 
Protein GI159043594 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG2301] Citrate lyase beta subunit 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones13 
Plasmid unclonability p-value0.00200106 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clones41 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACCGCGC CGCGCGCCCT GCGCTCGTTT CTGTTCGCCC CGGCCAACCG ACCCGCGATC 
TTCGACAAGG CGCGCGGGTC GGGCGCCGAT GCGGTCTGCC TCGATCTCGA GGACGCGGTG
CCGCCGGACC AGAAGGCCAC CGCCCGCGCC CCGGCGCTGG AATGGCTGGT GCAGGCGGCG
GACCCGGGCT GCGGGGTGCG GATCAACGGG TTGCGCACGC CCGAGGGGCT GGCCGATATC
GCCGCACTCT GTGCCGCGCG CCCGGGGCCG GGCTTTGTCC TTCTGCCCAA GGTCGGCGCC
GCGGCGGAGG TGCAGATCGC CGCCGAAGCG CTGGAGGCCG CGGGCAGCGA CCTGTCGCTT
GGCGCGCTGA TCGAGACCGC CGAAGGGCTG GAGGCGGTGG CACGGATCGC GCGGGCCTCC
GACCGACTGA GCTTCCTGCT CTTCGGTGCG GTGGATCTCG CGGCCGATCT CGGCGTGGAC
GGCTCGGATG CGGCGCTCGC CTATGCCCGG GGGCGCGTGG TCCATGCGGG GCGCGCGGCG
GGGCGCCCGG TGCTCGACGT GCCCGCGCTG GATTTCCGCG ACCTGGCGGC GGTGGGCCAG
GCGGCGGCGC GCGCCAAGGC ACACGGGTTT TCCGGCAAGG CGGCGATCCA CCCGTCGAAC
ATCGCGGTGA TCAACGACGC CTTCACCCCC GGCGCGGAGG AGATCGCCGA GGCGCAAGAG
GTTCTCGCCC TGTACGAAGC ATCACCCAAC GGGCTGGCCG TGCGCAACGG CAAGCTGATC
GAGAAGCCGG TGATCCGCGC GATGGAGGCG CGGCTGGCGC TGGCGCGCGC GGCGGGGCGG
CTGTGA
 
Protein sequence
MTAPRALRSF LFAPANRPAI FDKARGSGAD AVCLDLEDAV PPDQKATARA PALEWLVQAA 
DPGCGVRING LRTPEGLADI AALCAARPGP GFVLLPKVGA AAEVQIAAEA LEAAGSDLSL
GALIETAEGL EAVARIARAS DRLSFLLFGA VDLAADLGVD GSDAALAYAR GRVVHAGRAA
GRPVLDVPAL DFRDLAAVGQ AAARAKAHGF SGKAAIHPSN IAVINDAFTP GAEEIAEAQE
VLALYEASPN GLAVRNGKLI EKPVIRAMEA RLALARAAGR L