| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_1043 |
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| Symbol | |
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| ID | 5711011 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dinoroseobacter shibae DFL 12 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009952 |
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| Strand | - |
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| Start bp | 1076851 |
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| End bp | 1077846 |
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| Gene Length | 996 bp |
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| Protein Length | 331 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 641266954 |
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| Product | TRAP dicarboxylate transporter- DctP subunit |
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| Protein accession | YP_001532386 |
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| Protein GI | 159043592 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG1638] TRAP-type C4-dicarboxylate transport system, periplasmic component |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.000669152 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 43 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACACTGC ATACCCGACT TCTCGCCGCC GGCGCGGCCC TTCTTCTGGC GGCCCCGGCG
CTGTCCCAGG AGGCCCGGCT GAGCGTGGTC TACTCGCTGC CTGCGACAAA CGACCTGATG
CAAAGCTATT TCGCCTTCGT CGAGGACGTG AACGCCAATG GCGCGGGCAT CCTGCAAATC
GACCTGCGCG GCGGCACCGA GATCCTGCCC CGGAACGAGC AGATGAACGC GGTCTCGCGC
GGGATCATCG ACCTCTATTT CGGGCCGGCA GGCTATTACC AGCGCCAGGT GCCGGAGCTG
ACCCCGCTCG ACGCCGCCGC GGTGCCTGCC GACAAGCTGC GCGCCGCGGG GCTGCACGAC
GCCATCGATG CCGGCACGCG GGAGCGCGCG GGCGTGGCGT TCCTGGGCGC GATGGGGACG
GGATACAATT TCCAGTTCTA CACCATCACC GAGCCCAAGA TCGACGATGA CGGCACGATG
GATTTCTCGG GGCTCAAGAT CCGCGGCGGC GCATCCTATG ACCCGATGTA CCAGGCGCTC
GGCATCGCCC GGGTCGATGT GCCCGCGGGC GATATCTATA CCGCGCTGGA ACGCGGGCTG
GTCGAGGGGA TCGGGTTCAC CACCATCGGG GTCAGCTCCG GCGGATGGCA GGATTTCCTG
CGCTACCGGA TCTTCCCGAC CTGGCGCCAG GGCAACACGA TCATCGCCGC GAACGCCGCG
AAATTCGACG GGCTGACCGA GGAGCAGCGC GCCTACCTGA TGGAGATGAT CCAGAAGCAC
GAGATGCTGG CCTATGACGC CGCCAAGGCG CTGGAGGCGG TGGATACCGC CGCCCTGGCC
GAGGCGGGCG TGCAGGATGT CGTGCTCGAA GGCGCGGGCG CCGCCGAGGT CACCGCCGCC
TTCCAGGACA CGTTCTGGGT CAACGTGGCC GAGACCCTGG GCGAGGACGC GGCCGCCAAG
TACCGCGCCA TCATCGACGC GGCCAACGGC AGCTGA
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| Protein sequence | MTLHTRLLAA GAALLLAAPA LSQEARLSVV YSLPATNDLM QSYFAFVEDV NANGAGILQI
DLRGGTEILP RNEQMNAVSR GIIDLYFGPA GYYQRQVPEL TPLDAAAVPA DKLRAAGLHD
AIDAGTRERA GVAFLGAMGT GYNFQFYTIT EPKIDDDGTM DFSGLKIRGG ASYDPMYQAL
GIARVDVPAG DIYTALERGL VEGIGFTTIG VSSGGWQDFL RYRIFPTWRQ GNTIIAANAA
KFDGLTEEQR AYLMEMIQKH EMLAYDAAKA LEAVDTAALA EAGVQDVVLE GAGAAEVTAA
FQDTFWVNVA ETLGEDAAAK YRAIIDAANG S
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