| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_1041 |
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| Symbol | |
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| ID | 5711009 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dinoroseobacter shibae DFL 12 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009952 |
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| Strand | - |
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| Start bp | 1075005 |
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| End bp | 1076324 |
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| Gene Length | 1320 bp |
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| Protein Length | 439 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 641266952 |
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| Product | TRAP dicarboxylate transporter |
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| Protein accession | YP_001532384 |
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| Protein GI | 159043590 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG1593] TRAP-type C4-dicarboxylate transport system, large permease component |
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| TIGRFAM ID | [TIGR00786] TRAP transporter, DctM subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 0.128417 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 39 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCTCATGG AATGGTGGGA AGCGGCCCTT CTGATGCTCG GGATGGTGAT CGGGCTGATG
GCGCTTTGTG TGCCGGTGGC CTTTGCCTTC CTCATCGCGA ACCTGATCGG GGCCTATATC
TTCATGGGCG GGCTGATCGG GGTCGAGCAG CTGGTCGCCA ATACCGGGGA GGCTGTGTCG
AGCTTCGTGC TGGTCACGGT GCCGATGTTC GTGCTGATGG GGAACCTGTT TTTCCATTCC
GGCATCGCGC TGAAGATCAT CGAGACGCTC GACCGATCCA TGGGCCGCTC CACCGGGCGG
CTCAGCTACA TATCCGTTCT CTGCGGAACA ATCTTCGCCG CCCTGTCGGG GTCCAACATG
GCCAACACGG CGATGATGGG GGGGCTGCTG CTGCCGCAGA TGGAAGAACG GAAGTACCAG
CGCCATATGT CCATCGGCCC GATCATCGGC TCGGGGGGAC TGGCACTGCT GATCCCGCCC
TCGACACTCG CGGTGCTCTT GGGCTCCATC GCGCAGATCA GCATCGCGGA CCTGCTGCTG
GCGGGTGTGC TGCCGGGGCT GGTGCTCGCG CTGCTCTACG TGGCGACGAT CTGGCTGCAA
CTGCGGCGCA ACCCTCAGGC CGCGCCCGCC TATGACGTGG TGACCGCGCC GTTCTGGGAA
AAGATCCGCC TGATCTGCAC CTATATCCTG CCCATGTCTC TGGTGGTGTT CTGTGTTGTC
GGGTTGATCC TGCTGGGCAT CACCACCCCG TCGGAGGCCG CGGCCTTCGG CGTGCTGTCG
GTGCTTGTGC TGTCGATCCT TTATGGCCGG TTCTCATGGG ACATGGTCGC GAAATCCCTC
GAAGGCACCC TGCGCGTGTC GGTCATGGTG TTCTTCATCA TCATCGCCTC GAAAACCTTC
AGCCAGGTGC TGGCGTTTTC CGGGGCGACC TCGGGGATGA TCGCATGGGC GACCTCCTAC
GAATTCGCGC CGATCACCAT GCTGTTGATC ATGTTCGTCG TGCTGCTGAT CCTGGGGATG
TTCGTCGATG CGATCTCGAT GATGCTGCTG ACGATCCCGA TCTTCTTTCC CATCGCCGCC
GCCATGGGGT TCGATCCGAT CTGGTTCGGC CTCGTGATGC TGCTGGCCAT CGAGATGAGC
GGAACGACAC CGCCCTTTGG CCTGTTGTTG TTCGTGATGC AGGGGGTGGC GCCGCCGGGC
ACGACCTATT GGACCATCGT GCGGGCGGCC GCGCCTTACC TGATCTGTGA CCTGATCCTG
CTGGTCGGGC TGATCGCGGT GCCTGCGCTG GCGCTGTGGC TGCCGGGGCT GAGGTTCTGA
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| Protein sequence | MLMEWWEAAL LMLGMVIGLM ALCVPVAFAF LIANLIGAYI FMGGLIGVEQ LVANTGEAVS
SFVLVTVPMF VLMGNLFFHS GIALKIIETL DRSMGRSTGR LSYISVLCGT IFAALSGSNM
ANTAMMGGLL LPQMEERKYQ RHMSIGPIIG SGGLALLIPP STLAVLLGSI AQISIADLLL
AGVLPGLVLA LLYVATIWLQ LRRNPQAAPA YDVVTAPFWE KIRLICTYIL PMSLVVFCVV
GLILLGITTP SEAAAFGVLS VLVLSILYGR FSWDMVAKSL EGTLRVSVMV FFIIIASKTF
SQVLAFSGAT SGMIAWATSY EFAPITMLLI MFVVLLILGM FVDAISMMLL TIPIFFPIAA
AMGFDPIWFG LVMLLAIEMS GTTPPFGLLL FVMQGVAPPG TTYWTIVRAA APYLICDLIL
LVGLIAVPAL ALWLPGLRF
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