| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_1037 |
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| Symbol | |
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| ID | 5711005 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dinoroseobacter shibae DFL 12 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009952 |
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| Strand | + |
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| Start bp | 1069438 |
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| End bp | 1070742 |
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| Gene Length | 1305 bp |
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| Protein Length | 434 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 641266948 |
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| Product | TRAP dicarboxylate transporter |
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| Protein accession | YP_001532380 |
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| Protein GI | 159043586 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG1593] TRAP-type C4-dicarboxylate transport system, large permease component |
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| TIGRFAM ID | [TIGR00786] TRAP transporter, DctM subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 25 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 33 |
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| Fosmid unclonability p-value | 0.555488 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGACCCCG ATATCATCTC TCTCATCCTG ATCGGTGCGA TGCTCGCGAT GCTCGCGGCG
GGCATCTGGG TGTCGCTGAC GCTGATGATC GTGGGGTTTC TGGGCATCGC CCTGTTCTCC
AACGCGCCGG CGGGCGCGAT CATGGCCACG ACCATCTGGG CGCAAAGCTG GTCCTGGGCG
CTCACGGCCC TGCCGCTCTT CATCTGGATG GGGGAGATCC TGTTCCGCAC CAAGCTGGCG
GCCAACATGT TCAACGGCCT CGTGCCCTGG ATGAACGCGC TGCCGGGGCG ATTGCTCCAT
GTGAACGTGG CAAGTTGCGG GCTGTTCGCC GCCGTCTCGG GCTCGTCGGC GGCCACCACC
GCCACCATCG GCCGGATCAC CATCCCCGAG CTGGAAAAGC GCGATTACGA CCAGAACATG
ATCGTGGGCT CGCTCGCGGG CTCGGCGACG CTGGGCTTTC TGATCCCGCC CTCGATCATC
CTGATCGTCT ACGGGGTGGC CGCCGAGGTG TCGATCAGCC GCCTGTTCAT CGCAGGCATC
CTGCCGGGGC TGATGCTGAT GGTGCTCTTC ATGGGCTACA TCATGCTGTG GTCGCTGATG
CATCCCGACC GCACCCCACC CGCAGAGCCG CGCATTCCAT ACCTGGAACG GATCAAGGCG
ACGGCGGGGC TCTTCCCGAT GCTGGGCCTG ATCTTCGCGG TGATCGGGTC GATCTACGCG
GGCCTCGCCA CGCCGACCGA GGCGGCGGCG GTCGGGGTTC TGGGCGCGCT GCTGCTCTCG
GCCTTGTCGG GCACGCTCAA CTGGGCCTCG TTTCGCGACA GCGTCGCGGG GGCCACGCGC
ACCACCTGCA TGATCACGCT GATCCTGGCG GGGGCGGCGT TCCTGTCGGT GGCCATGGGC
TTCACCGGCA TCCCGCGCAA CCTCGCCGCC TGGGTCGGGA GTTTCGAGCT GAGCCAGTTC
CAGCTGCTGC TGGCGCTGAC ACTGCTGTTC GTGGTGATGG GGTGTTTTCT CGACGGGATT
TCCATCGTGG TGCTGACTGC GTCGGTGATC ATGCCGATGG TGCAGGGGGC CGGGATCGAC
CTGATTTGGT TCGGGATCTA CCTGGTGGTG GTGATCGAGA TGTCGCAGAT CACGCCGCCC
GTGGGGATCA ACCTGTTCAT TCTGCAATCC ATGACCCGCC ACGACCTGCT GACCGTGGCG
AAAATGGCCT TCCCGTTCTT CCTGGTGCTG GTGCTGGCGA CGCTGCTGCT GATCCTGTTT
CCGGGGATCG CGACCTATCT GCCGAGCCTG ATGACCCGCG GTTAG
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| Protein sequence | MDPDIISLIL IGAMLAMLAA GIWVSLTLMI VGFLGIALFS NAPAGAIMAT TIWAQSWSWA
LTALPLFIWM GEILFRTKLA ANMFNGLVPW MNALPGRLLH VNVASCGLFA AVSGSSAATT
ATIGRITIPE LEKRDYDQNM IVGSLAGSAT LGFLIPPSII LIVYGVAAEV SISRLFIAGI
LPGLMLMVLF MGYIMLWSLM HPDRTPPAEP RIPYLERIKA TAGLFPMLGL IFAVIGSIYA
GLATPTEAAA VGVLGALLLS ALSGTLNWAS FRDSVAGATR TTCMITLILA GAAFLSVAMG
FTGIPRNLAA WVGSFELSQF QLLLALTLLF VVMGCFLDGI SIVVLTASVI MPMVQGAGID
LIWFGIYLVV VIEMSQITPP VGINLFILQS MTRHDLLTVA KMAFPFFLVL VLATLLLILF
PGIATYLPSL MTRG
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