Gene Dshi_1029 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDshi_1029 
SymboltrpF 
ID5710997 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDinoroseobacter shibae DFL 12 
KingdomBacteria 
Replicon accessionNC_009952 
Strand
Start bp1063346 
End bp1064032 
Gene Length687 bp 
Protein Length228 aa 
Translation table11 
GC content72% 
IMG OID641266940 
Productphosphoribosylanthranilate isomerase 
Protein accessionYP_001532372 
Protein GI159043578 
COG category[E] Amino acid transport and metabolism 
COG ID[COG0135] Phosphoribosylanthranilate isomerase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones28 
Plasmid unclonability p-value0.96854 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones32 
Fosmid unclonability p-value0.346372 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCCCGTTC TCGTTGATCC CGCGCCCCGG GGCGCCGCCC GGACGGGCGT GGTGCAGGTC 
AAGATCTGCG GGCTGAGAAC CGCAGCGGAC GTGGATGCCG CGGCCCGGGC CGGGGCGCGC
TATGGCGGCT TCGTGTTCTT TCCCAAATCC CCGCGCCACC TGGAGATCGA CGCCGCGGCT
GCCCTGGCCG CAGAGGCGCC GGTGGGCCTG GCGAAAGTGG CGCTGGTGGT GAACCCGTCC
GATGCCGATC TGGACGCGCT GCTGGCCCGG ATGCCGGTGG ATATCCTGCA GCTTCATGGC
CGCGAAACCC CAGCGCGCGT GACCGAGATC CGCACCCGGA CCGGCCTGCC GGTGATGAAG
GCCGTGGGGA TCGCCGAGGC CACCGACCTG CCCGCCATCG CCGCATACGA GGCGGTGGCC
GACCAGATCC TGGTAGATGC CAAGCCGCCC CGGGAGGCCA CGCTGCCGGG CGGCAACGGG
CTGGCTTTCA ACTGGCGGCT TCTGCAGGGG CGGGTGTGGC GCAAGCCCTG GATGCTGGCG
GGCGGGCTGA CGCCCGAGAC GGTGGGTGAG GCGATCCGGC TGACCGGCGC GGCCCAGGTC
GATGTGAGCT CCGGTGTCGA GTCGGCACCG GGGGTGAAGG ATGCCGGGGC GATCGCGGAT
TTCGTGGCCG CGGCGCAGCA GGCTTAA
 
Protein sequence
MPVLVDPAPR GAARTGVVQV KICGLRTAAD VDAAARAGAR YGGFVFFPKS PRHLEIDAAA 
ALAAEAPVGL AKVALVVNPS DADLDALLAR MPVDILQLHG RETPARVTEI RTRTGLPVMK
AVGIAEATDL PAIAAYEAVA DQILVDAKPP REATLPGGNG LAFNWRLLQG RVWRKPWMLA
GGLTPETVGE AIRLTGAAQV DVSSGVESAP GVKDAGAIAD FVAAAQQA