Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Dshi_1029 |
Symbol | trpF |
ID | 5710997 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Dinoroseobacter shibae DFL 12 |
Kingdom | Bacteria |
Replicon accession | NC_009952 |
Strand | + |
Start bp | 1063346 |
End bp | 1064032 |
Gene Length | 687 bp |
Protein Length | 228 aa |
Translation table | 11 |
GC content | 72% |
IMG OID | 641266940 |
Product | phosphoribosylanthranilate isomerase |
Protein accession | YP_001532372 |
Protein GI | 159043578 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG0135] Phosphoribosylanthranilate isomerase |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 28 |
Plasmid unclonability p-value | 0.96854 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 32 |
Fosmid unclonability p-value | 0.346372 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCCCGTTC TCGTTGATCC CGCGCCCCGG GGCGCCGCCC GGACGGGCGT GGTGCAGGTC AAGATCTGCG GGCTGAGAAC CGCAGCGGAC GTGGATGCCG CGGCCCGGGC CGGGGCGCGC TATGGCGGCT TCGTGTTCTT TCCCAAATCC CCGCGCCACC TGGAGATCGA CGCCGCGGCT GCCCTGGCCG CAGAGGCGCC GGTGGGCCTG GCGAAAGTGG CGCTGGTGGT GAACCCGTCC GATGCCGATC TGGACGCGCT GCTGGCCCGG ATGCCGGTGG ATATCCTGCA GCTTCATGGC CGCGAAACCC CAGCGCGCGT GACCGAGATC CGCACCCGGA CCGGCCTGCC GGTGATGAAG GCCGTGGGGA TCGCCGAGGC CACCGACCTG CCCGCCATCG CCGCATACGA GGCGGTGGCC GACCAGATCC TGGTAGATGC CAAGCCGCCC CGGGAGGCCA CGCTGCCGGG CGGCAACGGG CTGGCTTTCA ACTGGCGGCT TCTGCAGGGG CGGGTGTGGC GCAAGCCCTG GATGCTGGCG GGCGGGCTGA CGCCCGAGAC GGTGGGTGAG GCGATCCGGC TGACCGGCGC GGCCCAGGTC GATGTGAGCT CCGGTGTCGA GTCGGCACCG GGGGTGAAGG ATGCCGGGGC GATCGCGGAT TTCGTGGCCG CGGCGCAGCA GGCTTAA
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Protein sequence | MPVLVDPAPR GAARTGVVQV KICGLRTAAD VDAAARAGAR YGGFVFFPKS PRHLEIDAAA ALAAEAPVGL AKVALVVNPS DADLDALLAR MPVDILQLHG RETPARVTEI RTRTGLPVMK AVGIAEATDL PAIAAYEAVA DQILVDAKPP REATLPGGNG LAFNWRLLQG RVWRKPWMLA GGLTPETVGE AIRLTGAAQV DVSSGVESAP GVKDAGAIAD FVAAAQQA
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