| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_1025 |
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| Symbol | rpsA |
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| ID | 5710993 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dinoroseobacter shibae DFL 12 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009952 |
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| Strand | + |
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| Start bp | 1060024 |
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| End bp | 1061700 |
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| Gene Length | 1677 bp |
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| Protein Length | 558 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 641266936 |
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| Product | 30S ribosomal protein S1 |
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| Protein accession | YP_001532368 |
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| Protein GI | 159043574 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0539] Ribosomal protein S1 |
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| TIGRFAM ID | [TIGR00717] ribosomal protein S1 |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 0.0436614 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 33 |
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| Fosmid unclonability p-value | 0.528214 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCTCAAA GCGCAACCAT GGAGGAATTC GAAGCCCTCC TGCAAGAAAG CTTCGAAATC
GACACGCCCA CCGAAGGGTC TGTCGTCAAA GGCAAGGTCA TCGCAATCGA AGCGGGACAG
GCCATTATCG ATGTCGGCTA CAAGATGGAA GGCCGCGTCG AACTCAAGGA ATTCGCAAAC
CCCGGCGAAG CGCCCGAAAT CGAAGTGGGT GACGAGGTCG AGGTGTTTCT CGACCGGGTC
GAGAATGCCC GTGGCGAAGC GGTCATTTCC CGCGACAAGG CTCGCCGCGA GGAAGCCTGG
GATCGCCTGG AGAAAGCCTA CGAGGACGAT GCCCGCGTCG AGGGCGCGAT CTTCGGTCGG
GTCAAGGGCG GCTTCACGGT CGATCTCGGC GGTGCCGTGG CGTTCCTGCC CGGCTCCCAG
GTCGATGTGC GCCCGGTGCG CGACGCAGGC CCGCTCATGG GTCTCAAGCA GCCGTTCCAG
ATCCTCAAGA TGGACCGCCG CCGGGGCAAT ATCGTGGTGT CGCGTCGTGC GATCCTCGAA
GAGTCCCGCG CCGAGCAGCG CGCCGAGGTT ATCGGCAAGC TGAACGAAGG CGACGCGGTG
GACGGCGTGG TCGAGAACAT CACCGAATAC GGCGCGTTCG TCGATCTCGG CGGTGTGGAC
GGGCTGCTGC ACGTCACCGA CATGGCCTGG CGCCGGGTCA ACCACCCCTC CGAGATCCTG
GCGATCGGCG AGACCGTCAA GGTCCAGGTC ATCAAGATCA ACAAGGAAAC CCACCGCATC
AGCCTCGGCA TGAAGCAGCT GCAGGACGAT CCGTGGAACC TGGTCGAGGG CAAGTACCCG
CTGGACAGCG TCCACACCGG CCGCGTCACC AACATCACCG ATTACGGCGC CTTCGTGGAG
CTGGAGCCGG GGGTCGAGGG GCTCGTGCAC GTCTCGGAAA TGTCCTGGAC CAAGAAGAAC
GTCCATCCGG GCAAGATCGT CTCCACCAGC CAGGAGGTCG AGGTCATGGT GCTCGAGATC
GACACGGTCA AGCGCCGCGT CTCGCTCGGG CTCAAGCAGA CCATGCGCAA CCCGTGGGAG
GTTTTTGCCG AAACCCACCC CGAGGGCACA GAGGTCGAGG GCGAGGTCAA GAACATCACC
GAATTCGGTC TGTTCATCGG TCTCGAGAAC GACATCGACG GCATGGTTCA CCTCAGCGAT
CTCAGCTGGG ATCAGCGCGG CGAGGAAGCC ATCCAGAACT ACCGCAAGGG CGATGTCGTC
CAGGCGGTCG TGTCGGAAGT GGATGTCGAG AAAGAGCGGA TCTCGCTGTC GGTCAAGGCG
CTTGGCGGTG ACAAGTTCGC CGAGGCCGTG GGCGGCGTGA AGCGCGGCTC GATCATCACC
GTGGAAGTGA CTGCCATCGA AGACGGCGGG ATCGAGGTGG AATACGAAGG CATGAAGTCC
TTCATCCGCC GCTCGGACCT GAGCCGCGAC CGGGCCGAAC AGCGCCCCGA GCGGTTCGGC
GTGGGCGACA AGGTCGATGT GCGCGTGACC AACGTGGACA ACAAGACCCG TCGTCTCGGC
CTGTCGATCA AGGCCCGCGA GATCGCCGAA GAGAAGGAAG CCGTGGAACA GTACGGCTCC
TCCGACAGCG GCGCGTCCCT CGGCGACATC CTCGGCGCGG CGCTCAAGAA AGACTGA
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| Protein sequence | MAQSATMEEF EALLQESFEI DTPTEGSVVK GKVIAIEAGQ AIIDVGYKME GRVELKEFAN
PGEAPEIEVG DEVEVFLDRV ENARGEAVIS RDKARREEAW DRLEKAYEDD ARVEGAIFGR
VKGGFTVDLG GAVAFLPGSQ VDVRPVRDAG PLMGLKQPFQ ILKMDRRRGN IVVSRRAILE
ESRAEQRAEV IGKLNEGDAV DGVVENITEY GAFVDLGGVD GLLHVTDMAW RRVNHPSEIL
AIGETVKVQV IKINKETHRI SLGMKQLQDD PWNLVEGKYP LDSVHTGRVT NITDYGAFVE
LEPGVEGLVH VSEMSWTKKN VHPGKIVSTS QEVEVMVLEI DTVKRRVSLG LKQTMRNPWE
VFAETHPEGT EVEGEVKNIT EFGLFIGLEN DIDGMVHLSD LSWDQRGEEA IQNYRKGDVV
QAVVSEVDVE KERISLSVKA LGGDKFAEAV GGVKRGSIIT VEVTAIEDGG IEVEYEGMKS
FIRRSDLSRD RAEQRPERFG VGDKVDVRVT NVDNKTRRLG LSIKAREIAE EKEAVEQYGS
SDSGASLGDI LGAALKKD
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