| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_1021 |
|---|
| Symbol | trmB |
|---|
| ID | 5710537 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dinoroseobacter shibae DFL 12 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009952 |
|---|
| Strand | + |
|---|
| Start bp | 1056510 |
|---|
| End bp | 1057241 |
|---|
| Gene Length | 732 bp |
|---|
| Protein Length | 243 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 70% |
|---|
| IMG OID | 641266932 |
|---|
| Product | tRNA (guanine-N(7)-)-methyltransferase |
|---|
| Protein accession | YP_001532364 |
|---|
| Protein GI | 159043570 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG0220] Predicted S-adenosylmethionine-dependent methyltransferase |
|---|
| TIGRFAM ID | [TIGR00091] tRNA (guanine-N(7)-)-methyltransferase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 0.13718 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 33 |
|---|
| Fosmid unclonability p-value | 0.410513 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGCGATG ATGCGTCCCA CCCCCCCAAG ACCGCCCCCT CCGGCGCGCC CTGGCGCAAT
TTCTATGGCC GCCGCAAGGG CAAGGGCCTG CGCCCGTCCC AGGAGGCCTA CCTGGAGGAG
GACCTTGCCG CGCTCTCCCC GGGTCCTGTG TCCTGGGAGG CGAACCCGGA GCGTCGCCCG
CTCGATCTGG CCAGCCGGTT CGGGGATCGC GAGATCTGGC TCGAGATCGG CTTCGGCGGG
GGCGAGCACA TGGTGCACCA GGCCGCGACC TATCCGGAGA TCGGGATCAT CGGGGCCGAA
CCCTATATCA ACGGGGTCGC GATGCTTCTG GGCAAGATCC GGGCGGCGGG GGTCGAGAAC
CTCGCCGTGC ATCCGGGCGA TGCGCGGGAT CTCTTCGATG TGCTGGCCCC GGGCAGTGTC
GCCAAGGCCT TCCTGCTCTA TCCCGATCCC TGGCCGAAGA AACGCCACCA TCGCCGCCGC
TTCGTCACCC CCGAGCATCT GGAGCCCCTG GCGCGGGTGC TGCGGCCGGG CGCGGAGTTT
CGCATCGCCA CGGACATTCC CGACTATGTC CGGCAGGCCC TGGAGGAAGT GCCGCGCGCG
GGCTTCGACT GGCTGGCCGA GGGGCCGGAG GATTGGCGGC GGCCCTGGGG CGACTGGATC
TCCACCCGCT ACGAGCAGAA GGCGCTGCGC GAGGGGCGCA CGCCCCATTA CCTGACCTTT
CGCCGCCGCT GA
|
|---|
| Protein sequence | MSDDASHPPK TAPSGAPWRN FYGRRKGKGL RPSQEAYLEE DLAALSPGPV SWEANPERRP
LDLASRFGDR EIWLEIGFGG GEHMVHQAAT YPEIGIIGAE PYINGVAMLL GKIRAAGVEN
LAVHPGDARD LFDVLAPGSV AKAFLLYPDP WPKKRHHRRR FVTPEHLEPL ARVLRPGAEF
RIATDIPDYV RQALEEVPRA GFDWLAEGPE DWRRPWGDWI STRYEQKALR EGRTPHYLTF
RRR
|
|---|
| |