| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_1015 |
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| Symbol | |
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| ID | 5710531 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dinoroseobacter shibae DFL 12 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009952 |
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| Strand | - |
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| Start bp | 1049443 |
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| End bp | 1049988 |
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| Gene Length | 546 bp |
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| Protein Length | 181 aa |
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| Translation table | 11 |
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| GC content | 70% |
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| IMG OID | 641266926 |
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| Product | protein of unknown function UPF0054 |
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| Protein accession | YP_001532358 |
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| Protein GI | 159043564 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG0319] Predicted metal-dependent hydrolase |
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| TIGRFAM ID | [TIGR00043] metalloprotein, YbeY/UPF0054 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 0.00876846 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 38 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGACGCCGA CGATCCGACC TGACGACCCG GCCCGCGCCA CGGTCGAGAT CGCGACCGAG
GATGCGGCCT GGGACGCGCT GGACCTGGAG GCGCTCGCGG GCCGCGCCGT GGATGCCACG
CTGGTGGCGC TCGACCTGCC GCCCGCCGCG TTCGAGGTGT CGATCCTGGC CTGCGACGAC
GCCCGCATCG CCACCCTGAA CGGCGAGTTC CGCGGCAAGC CCACGCCCAC CAACGTGCTC
AGCTGGCCTG CCGAGGACCG CGCGCCCGAC ACGCCCGGCG GTGCCCCACA CCTGCCCGAC
CCGGGCGATC CCATGGCCGC CGAGCTGGGC GATCTGGCGC TGGCCCATGG CACCTGCGCG
CGGGAGGCCG CCGAGGCGGG CAAGCCGCTG GCCGATCACG TCACCCACCT GATCGTGCAC
GGGACCCTGC ATTTGCTGGG GTTCGACCAC GAAACCGACG CCGATGCCGC GCGCATGGAA
GGGCTGGAGG TGAAAATTCT TCAAACCCTC AACATGGCTA ACCCTTATGA AACGCCTATG
GTATAG
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| Protein sequence | MTPTIRPDDP ARATVEIATE DAAWDALDLE ALAGRAVDAT LVALDLPPAA FEVSILACDD
ARIATLNGEF RGKPTPTNVL SWPAEDRAPD TPGGAPHLPD PGDPMAAELG DLALAHGTCA
REAAEAGKPL ADHVTHLIVH GTLHLLGFDH ETDADAARME GLEVKILQTL NMANPYETPM
V
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