| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_0990 |
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| Symbol | |
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| ID | 5710505 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dinoroseobacter shibae DFL 12 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009952 |
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| Strand | - |
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| Start bp | 1009203 |
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| End bp | 1013882 |
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| Gene Length | 4680 bp |
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| Protein Length | 1559 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 641266900 |
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| Product | putative DNA helicase related protein |
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| Protein accession | YP_001532333 |
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| Protein GI | 159043539 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG1112] Superfamily I DNA and RNA helicases and helicase subunits |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 30 |
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| Fosmid unclonability p-value | 0.649093 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | TTGTCAGATC CAGCGATTTC GAAAGTGCTC GAAGCGGCTC GCCGCAAGCT GCTGGACACC
GGGACTCGTA ACCGCCTCGT CCATGTAAAC CGGGCAAACA CACGCGCAAA TTGCCTCAAC
ATCATCAATG AACGCGCCGA CGACGTCTTT GCCATTCTTC GCAGCCAATC GCGCAAGATG
CGCTTCAAGG CCATGGGAAA GGATAAGTCC AGCGAAGGGC AGGACATGCT TCTGGCCCTG
CCAGAGCCCG AGATCCCCGA GGGTGCGGAC CGCTTAACGG ATCTCTTCCT AGAGACTCCA
CTTGGCCCGG AGGCACAGGC ACGCAGACTA CTTCGGCTGG CAACGAACGC CAAGACAGCA
GAGGAGGAGC AGGGCCTCAA CATCCTCTAC CTCGCCATGG GCTTCCTGCA ATGGCGCGAA
AGCCCCTCCT CCGAGACGCT GCGTGAAGCT CCTCTGATCT TGCTGCCTGT GCAACTGATC
CGCAACGAGC GGACGTCGAC CTACGATATT CTGTGCCGCG ACGACGACAT CGCCACTAAC
TTGCCACTGC AACAACGCCT CAGGACCGAC TTCGGCATTT CACTGCCGGA GATCGAGGAG
GGCGAAGACT GGAAACCCTC TGACTATTTT GCCCAGGTTC GAGACGCGAT CTCCGGCCAG
CCGGGATGGG CGCTGGACGC GGACGGAATG CAGCTCGGCT TCTTCTCCTT CGCCAAGCTT
CTGATGCATC GCGATCTCGA TACCGCGACC TGGCCCGAGG GAGCTTTTGC CGAAAACGAT
TTGTTGCGTG GGCTGTTGAC CGAAGGGTTC GAAGCGCCGA CGCCCATTTT CGGGCCGGAC
GATCGATTGG ACGATATCCT GGACCCTGCG GAAATTGTGC AGGTCATCGA CGCTGATGCC
TCACAAACCA AGGTGATCGA GGAGGTAAGG AGGGGTGCAA GCCTTGTGGT ACAGGGACCG
CCTGGAACCG GAAAATCCCA GACGATTACT AACCTGATCG CGGCAGCTGC TCATGACGGA
AAGACCGTGC TCTTCGTCGC TGAGAAGATG GCTGCTTTGT CGGTTGTACA CGATCGCCTT
GTGCGGGCAG GGTTACGCGA CATTTGCCTC GAACTGCACT CGCGTACAGC CAACAAGAAG
GCGCTTGCGC AGGAGTTGGG ACGGACTTTG ATGGCGAGCG CCCAGGCATT GCCTGGCACG
CCTGACCCCG CGCGACTGCG CAGCACACGG GACAATTTGA ACCGGATCAC TTCGTTGCTC
CATGATCCTC TGCCATCCTC CGGCGATACA CCGTTCCGCG CAATTGCCGA GATCTGTGGG
TTCATTGGAA ATGGCGCACC GCCACCTTGC ATCCCGCTTG AGGGCCTTGA CGAGCTTGAC
CAATGCAAGC GCGACGCCGC CTGCGCTGCC CTGTCCAAAT ATGCCGAGGC ACTGGAACGC
GCGGGCCCGC CTGAACAGCA CCCCTTTCGA GGCACCGGTG CGCTTGACTT ACAGCCGACG
GACCTAGCGC GCCTTGAAGA CGAACTCACC GGCGCTGCTT CTGAAATCGA AATACTCCTG
AGCGAAGGCC AACGCCTCGC TGACGCTACT GGTTTGGCAG CGCCCAATTC ATTGGGCGAG
GTTGACGCTC TTGGCGCTGC GCTGAGTGCG CTTGCCGGTA TTCCGCAGGG CGCCAAGGAC
TGGATTGCTC CGCTCTTCGA GCACGTTAGT TCCTCCCGCC TCGATGAAGC GCTTGCAGTG
GGTGCATCTT GGGCCGACGC GAAGCAGTCT GCAGAAACAC GTTTCGTCGA GGCTGCATGG
TCTGCCCAAG TCACAAGCAT TCGAACGGCA TTGGCCAAGG GGCAAGCCTC GTTCTTCTCT
CGTCTCTTCG GAGGATATCG ACGGGCATCG GCGGAACTTG CTGGTCTGCT TTCGGGACCT
TTGCCGAAGT CGCCATCAGA GCGACTGGCA CTCGTCGATG AGATCATGAA GGTTCAATCG
CTGCGCCACT CGCTGGCAGA TGAGGAAGCC TGGCTCCAGG CGATGCTCGG TCCAACATGG
CGTGGTGAGC GGACCCCTTT TTCCGTCGCC GCCTCCGCTT CGAAATGGTT GGCCGGGCTA
CGGGCAACCG GCAACATTGG TTCTTCGGAC CAACTTGTTT CTTCCCTGGA TGCAGTGCCC
GACCCAGAAG CTGCGGCCAA AGAGATCAAA ACAAAATCCA TCGCTTGCCG CCAGAGAATC
GATGCTCCGA TCACGCGGCT ACAATTGGAT GTGGTCCGTG CCGACTTGGG CACCGACTTG
GAAAATGCAT CGTTGTCGGA AATGCGTGAA GCATTCTTGC AGATGGCGAG CGATACAGCC
TGCTACGGAG ATTGGGTTGG GCTTGCCCGC GCCATTGCAT CCGCGATCGA CGCCGGAGCT
GAAGGGGTTG TAGACGCCGT TGCAGACGAA CGCGTTCCGC CGCAGCGCGC AGCGCAGGAA
TTTGCCTATG CGTGTGCAGA GGCCCGCTGG AACGCCGCAA GGGGCGCCCG GCCTGAGCTC
AACGACTTAC CGCAGCTTGA TCGCCATGAT CTCGTAGCCC TGTTCTCCGA CCTCGAGAAG
GAGCGCATCG ACACAGCACG CAACCTGATC CTCTCGCGGC ACTTCGAACA GATGCCTCGT
GGCACAATGG GCGAGATGGG CATCATCCGT GGAGAAATCG CCCGCAAGCG CGGCCACAAA
CCAATCCGCT GGGTGATGCG GAATGCCGGC CCGATGGTTC AACGCATCAA GCCGGTCATG
CTGATGAGTC CGATTTCAGT AGCGCAGTTC TTGCCTCCGG GCAGCGCAGA GTTCGATATT
CTGGTGATCG ATGAAGCCTC GCAGATCAAA CCCGAAGATG CGTTGGGAGT CATTGCCCGG
GCACGCCAGA TTGTAGTGGT AGGAGACCAG AAACAGCTTC CGCCCACGTC GTTCTTCGAC
CGCTTGGTCG ACGATGTCGA GGAAAATGAC GACGAAGAAG AAGCCGTCGT CGGCGCCACA
GCGGCCGATA TGGAAAGCAT CCTTTCGCTT TGCGAAGCCC GTGGACTGCG GCAACGCATG
CTCGAATGGC ACTACAGATC ACGCGATCCG TCTTTGATTC AGATTTCGAA TGCGGAGTTT
TATGAAGACC GGCTGGTTCT TCCCCCCTCT CCGCTGCAGC TTGACCCCGA CTACGGCCTG
AAATTTCGGC GCGTCCCTGG CATTTATGCG CGCGGCGGTA GCGGCTTGGG CCGACAAGGA
ACCAACCGGA TCGAGGCCGA GGCCGTCGTT GCCGCTATGG CCGATCACGC CCGCAATTGG
CCTGAGCTCT CTCTTGGTGT CGTCGCCTTT TCCAAGGCCC AGTCCAATAT GTTGACAGAA
GTGCTCGAAC TCGCCCGCCG CCGTGATCCG GTGCTGGATG CGTTCCTGCG TGAGGGCAAG
TCTGAGGACG TCTTCGTCAA AAATATCGAG AACGTTCAGG GCGACGAACG CGATGTGATC
CTGATCTCGG TTGGATACGG CCCTCAGGAG CCGAACGGGC GCTTACCTTC AATGAGCTTC
GGTCCGGTCA ACGGTGAAGG CGGAGAACGA CGACTGAACG TGCTTTTCTC TCGCTCGCGG
GTGCGCTGCG AGGTCTTTGC GTCATTCGAT CCCGGCGATA TCGACCCGTC ACGCAGCAGC
CGTGAAGGGC CGCGTTTGCT CAAACGGTTC CTTGATTTTG CCAAGACGGG ACAGATCGAA
ACCCACACCG TCACCGGCCT CGAGGCCGAC AGTCCGTTCG AAGAAGATGT CGCACGGGTG
ATCCGATCAG AGGGTTTCTT GGCGGACGCG CAGGTTGGAA GTGCGGGCTT TCGCATCGAC
ATCGGCGTAC GACATCCCGA CCAGCCCGGT CAGTATCTTC TGGCCGTGGA ATGTGACGGC
GCTGCCTATC ATGCAGCGCT CTGGGCGCGC GAACGCGATC GGCTGAGACA GGGCATACTT
GAAAACCTCG GCTGGCGGTT CCATCGCATT TGGAGCACCG ACTGGTTCCA CCATCGCTCA
CGAGAAGTCG AAAAACTAAG GGCTGCTATT GTTGAAGCAC GCGAAGCTCT CAATGACGGT
GTCCAAGTGC GCGGAGCCAA TCAAGGAGCC ACAAACATAC CGGCTTCGGA GGAGGTTTCA
GAGCATCAGC CGGAGACTAT CGATATCGGG CATCTCGCTT TGACTGCGCC GCCCTATGTA
CGGGCGGAGC TCTCGGTCCG CTCGTCGGTC GAACCGCACG AGGCACCGGT ACAGCAGCTT
TCGGAGCTTG TTTCGCGCAT CGTAGCGATT GAGGGACCGA TACACGCCGA CGAGATCGCA
CGTCGGATCG CTGCCGCCTT CGGACGCTCA CGCACCGGGA ACCGTATTGC CGATGCAGCC
TCCCGTGCTG TTCGATTGGC TCTGCAACGC GATACTGAGC TGCGCCGGGA TGGCGCCTTT
CTGATGACGT CCGCGCAAGC AGAAACACCA CCCGTCCGTG ATCGGAGCAG CGAAACTGGG
ACCGTTCTTA AGGCCGAATA CCTGCCTCCG AGCGAGATCG CAGCCGCTGC AAAGCTGGTA
CTGAAGGAAA GCGGTGAGGT TGGGCAAGAT GACCTTGTTC GGGCCGTGGC TCGCCTATTC
GGGTTCCAGA GAGTCGGCAC TGATCTTTCG GAAGCGATAC GAAACGGCCT GCCAAAATGA
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| Protein sequence | MSDPAISKVL EAARRKLLDT GTRNRLVHVN RANTRANCLN IINERADDVF AILRSQSRKM
RFKAMGKDKS SEGQDMLLAL PEPEIPEGAD RLTDLFLETP LGPEAQARRL LRLATNAKTA
EEEQGLNILY LAMGFLQWRE SPSSETLREA PLILLPVQLI RNERTSTYDI LCRDDDIATN
LPLQQRLRTD FGISLPEIEE GEDWKPSDYF AQVRDAISGQ PGWALDADGM QLGFFSFAKL
LMHRDLDTAT WPEGAFAEND LLRGLLTEGF EAPTPIFGPD DRLDDILDPA EIVQVIDADA
SQTKVIEEVR RGASLVVQGP PGTGKSQTIT NLIAAAAHDG KTVLFVAEKM AALSVVHDRL
VRAGLRDICL ELHSRTANKK ALAQELGRTL MASAQALPGT PDPARLRSTR DNLNRITSLL
HDPLPSSGDT PFRAIAEICG FIGNGAPPPC IPLEGLDELD QCKRDAACAA LSKYAEALER
AGPPEQHPFR GTGALDLQPT DLARLEDELT GAASEIEILL SEGQRLADAT GLAAPNSLGE
VDALGAALSA LAGIPQGAKD WIAPLFEHVS SSRLDEALAV GASWADAKQS AETRFVEAAW
SAQVTSIRTA LAKGQASFFS RLFGGYRRAS AELAGLLSGP LPKSPSERLA LVDEIMKVQS
LRHSLADEEA WLQAMLGPTW RGERTPFSVA ASASKWLAGL RATGNIGSSD QLVSSLDAVP
DPEAAAKEIK TKSIACRQRI DAPITRLQLD VVRADLGTDL ENASLSEMRE AFLQMASDTA
CYGDWVGLAR AIASAIDAGA EGVVDAVADE RVPPQRAAQE FAYACAEARW NAARGARPEL
NDLPQLDRHD LVALFSDLEK ERIDTARNLI LSRHFEQMPR GTMGEMGIIR GEIARKRGHK
PIRWVMRNAG PMVQRIKPVM LMSPISVAQF LPPGSAEFDI LVIDEASQIK PEDALGVIAR
ARQIVVVGDQ KQLPPTSFFD RLVDDVEEND DEEEAVVGAT AADMESILSL CEARGLRQRM
LEWHYRSRDP SLIQISNAEF YEDRLVLPPS PLQLDPDYGL KFRRVPGIYA RGGSGLGRQG
TNRIEAEAVV AAMADHARNW PELSLGVVAF SKAQSNMLTE VLELARRRDP VLDAFLREGK
SEDVFVKNIE NVQGDERDVI LISVGYGPQE PNGRLPSMSF GPVNGEGGER RLNVLFSRSR
VRCEVFASFD PGDIDPSRSS REGPRLLKRF LDFAKTGQIE THTVTGLEAD SPFEEDVARV
IRSEGFLADA QVGSAGFRID IGVRHPDQPG QYLLAVECDG AAYHAALWAR ERDRLRQGIL
ENLGWRFHRI WSTDWFHHRS REVEKLRAAI VEAREALNDG VQVRGANQGA TNIPASEEVS
EHQPETIDIG HLALTAPPYV RAELSVRSSV EPHEAPVQQL SELVSRIVAI EGPIHADEIA
RRIAAAFGRS RTGNRIADAA SRAVRLALQR DTELRRDGAF LMTSAQAETP PVRDRSSETG
TVLKAEYLPP SEIAAAAKLV LKESGEVGQD DLVRAVARLF GFQRVGTDLS EAIRNGLPK
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