| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_0988 |
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| Symbol | |
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| ID | 5710503 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dinoroseobacter shibae DFL 12 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009952 |
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| Strand | - |
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| Start bp | 1007057 |
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| End bp | 1008169 |
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| Gene Length | 1113 bp |
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| Protein Length | 370 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 641266898 |
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| Product | integrase family protein |
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| Protein accession | YP_001532331 |
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| Protein GI | 159043537 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG4974] Site-specific recombinase XerD |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 26 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 35 |
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| Fosmid unclonability p-value | 0.934972 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCCCACAT TCAGGATGAG AGACAGCTCG GGCAGCATCC GCCTGAAGCA CGTCATCGAG
GACACCGACC GGCACGGGAA CGTGCGCATC TACCTGCGGC GGCCCGGGCA CCTGAAGGTG
CGGCTGCGCA GCCAGCCGGG AACAGAAGAC TTCTTGGCCG AGTATCGCGC CGCGATGATG
GGGGCGACGC CGCGCGCGCC GACCGTACCG CTCGACCGGC GCGGATCGAA GGGCAGCTTC
AAGTGGCTCT GCGAGCAGTA CTATGTCTCG GCCGAGTACC AGCGCCTGAG CGGCCGCACC
AAGTATGTCC GGCGCGGCAT CCTCGACCGG ATCTGCGAGA AGAGCGGATC CAAGCCCTAC
GCGCTGATGG AGCCCCGCCA TGTCCGCCGC ATGCGTGACG AAATGGCGGA CCGTCCCGAG
GCCGCCAACG GCTTCGTCAA GGCACTGCGG CAGGTCTATT CTTTCGCGGT CGAATACGAG
CTGGCACAGC GCAACCCTGC CCGCGACGTG CCCTACCTCA AGGCCAAGGG CGACGGCTTC
CACTCTTGGA CGATGGAGGA GGTCCGGCAG TTCGAGGAGC ATCACCCGAT CGGCAGCAAG
CCACGGCTGG CCCTCGCGCT CATGCTCTAC ACCGGGCAGC GGCGCTCGGA CATCGTCCGG
CTCGGGCCGC AGCACATCAA GGACGGCTGG ATCACCCTGA CCCAGGCCAA GAACCGTGAC
CGCAAGCCCG TCACCCTATC CATCCCGGTC CTGCCCGAGT TGAAGGCGGT GCTCGACGCC
ACGCCCACCG GCAACCTCGC CTTCCTCGTC ACGGCCTTCG GCAAGCCCTT CACCTCGAAC
GGCTTTGGCA ACTGGTTCCG CAAGCAATGC GACGAGGCCG GGTTGAAGCA TTGCTCCGCC
CACGGGCTGC GCAAGGCGGG CGCGGCGCTG GCGGCCGAGA ACGGCGCGAC CGAGCGGCAA
TTGATGGCGA TCTTCGGCTG GACGACCATG AAGGAAGCCT CGCGCTACAC CCGCGCCGCG
CGCCAGAGGG TGCTGGCGGC GTCCGGGATG AAGCTGTTGT CGCGGGGTGG AGACGGGCCG
GGAAGGGAGG AAGCGCGGGG TGGCGAAACG TGA
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| Protein sequence | MPTFRMRDSS GSIRLKHVIE DTDRHGNVRI YLRRPGHLKV RLRSQPGTED FLAEYRAAMM
GATPRAPTVP LDRRGSKGSF KWLCEQYYVS AEYQRLSGRT KYVRRGILDR ICEKSGSKPY
ALMEPRHVRR MRDEMADRPE AANGFVKALR QVYSFAVEYE LAQRNPARDV PYLKAKGDGF
HSWTMEEVRQ FEEHHPIGSK PRLALALMLY TGQRRSDIVR LGPQHIKDGW ITLTQAKNRD
RKPVTLSIPV LPELKAVLDA TPTGNLAFLV TAFGKPFTSN GFGNWFRKQC DEAGLKHCSA
HGLRKAGAAL AAENGATERQ LMAIFGWTTM KEASRYTRAA RQRVLAASGM KLLSRGGDGP
GREEARGGET
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