| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_0974 |
|---|
| Symbol | |
|---|
| ID | 5710487 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dinoroseobacter shibae DFL 12 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009952 |
|---|
| Strand | - |
|---|
| Start bp | 995276 |
|---|
| End bp | 996583 |
|---|
| Gene Length | 1308 bp |
|---|
| Protein Length | 435 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 641266882 |
|---|
| Product | extracellular solute-binding protein family 1 |
|---|
| Protein accession | YP_001532317 |
|---|
| Protein GI | 159043523 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG1653] ABC-type sugar transport system, periplasmic component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 23 |
|---|
| Plasmid unclonability p-value | 0.606433 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 29 |
|---|
| Fosmid unclonability p-value | 0.163223 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCCTTGA AGAACGCACT TTACGCGGCC ACCGCCCTGA CCCTTGTAAG CTCGGGCGCT
ATGGCAAGCG AAAACCTGGT AATCGCAACC GTCAACAATG GCGACATGAT CCGGATGCAG
GGTCTGACCC AGGATTTTAC CGACAAGACC GGCCACACGG TCGAGTGGGT GACCCTCGAA
GAGAACGTCC TGCGCCAGCG CGTCACGACG GATATTGCTG CCAAGGGCGG CTCCTTCGAC
ATCATGACCA TCGGCATGTA CGAAACTCCG ATCTGGGGCG CCAATGGCTG GCTCGTGCCG
CTGGACGATC TGTCCGCGGA CTACAACGCC GACGATATTC TGCCCGCGAT GCGCGCCGGT
CTGAGCCATG ACGGCACGCT CTATGCTGCG CCGTTCTACG GCGAAAGCTC CATGATCATG
TACCGCAAGG ACCTGATGGA GAAGGCCGGG CTGGAAATGC CCGATGCGCC GACCTGGCAG
TTCATCCGCG AAGCGGCCGC CGCCATGACC GACCGCGAGA ACGACATCAA CGGCATCTGC
CTGCGCGGCA AGGCCGGCTG GGGCGAAGGC GGCGCGTTCA TCACCGTCAC CGCGAACTCC
TTTGGCGCGC GCTGGTTCGA CGAGGACTGG AACGCCCAAT TCGACCAACC CGAGTGGAAA
GAGGCGCTGG AATTCTTCGT CGGCATGATG AACGAGTCCG GGCCGAACGG CTACGCCACC
AACGGCTTCA ACGAGAACCT GAACCTGTTC CAGCAGGGCA AGTGCGGCAT GTGGATCGAC
GCCACGGTGG CGGCGTCCTT CGTGACCAAC CCCAACGACT CGACCGTGGC CGACCAGGTG
GGCTTCGCCC TCGCCCCGAA CAGCGAGGGC ATCGAGAAGC GCGCGAACTG GCTCTGGGCC
TGGGCCCTGG CGATCCCCGC CGGCACGCAG AAGGCCGATG CCGCCAAGGA ATTCATCGAG
TGGGCCACCT CGACCGATTA TATCGAGTTG GTGGCCGCGA ACGAAGGTTG GGCCAACGTG
CCTCCGGGTG CGCGGACCTC GCTCTATGAG AACGAGAACT ACAAGGACAT TCCGTTCGCC
AAGATGACCC TGGATTCGAT CCTGGCTGCC GATCCGACCG ACCCGACCGT GGACCCGGTG
CCCTATGTTG GCATCCAGTT CGTCGCTATC CCCGAATTTG CGGGCATCGC CACCGAAGTC
AGCCAGGAAT TCTCCGCCGT CTATGCCGGT CAGCAGACCG TCGAAGAGGC GCTTGAGAAA
GCCCAGGCCC TGACCAACGA CGCCATGGAA GCCGCCGGCT ACCGCTAA
|
|---|
| Protein sequence | MSLKNALYAA TALTLVSSGA MASENLVIAT VNNGDMIRMQ GLTQDFTDKT GHTVEWVTLE
ENVLRQRVTT DIAAKGGSFD IMTIGMYETP IWGANGWLVP LDDLSADYNA DDILPAMRAG
LSHDGTLYAA PFYGESSMIM YRKDLMEKAG LEMPDAPTWQ FIREAAAAMT DRENDINGIC
LRGKAGWGEG GAFITVTANS FGARWFDEDW NAQFDQPEWK EALEFFVGMM NESGPNGYAT
NGFNENLNLF QQGKCGMWID ATVAASFVTN PNDSTVADQV GFALAPNSEG IEKRANWLWA
WALAIPAGTQ KADAAKEFIE WATSTDYIEL VAANEGWANV PPGARTSLYE NENYKDIPFA
KMTLDSILAA DPTDPTVDPV PYVGIQFVAI PEFAGIATEV SQEFSAVYAG QQTVEEALEK
AQALTNDAME AAGYR
|
|---|
| |