| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_0956 |
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| Symbol | |
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| ID | 5710647 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dinoroseobacter shibae DFL 12 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009952 |
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| Strand | - |
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| Start bp | 980662 |
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| End bp | 981948 |
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| Gene Length | 1287 bp |
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| Protein Length | 428 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 641266867 |
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| Product | TRAP dicarboxylate transporter |
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| Protein accession | YP_001532302 |
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| Protein GI | 159043508 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG1593] TRAP-type C4-dicarboxylate transport system, large permease component |
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| TIGRFAM ID | [TIGR00786] TRAP transporter, DctM subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 39 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 36 |
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| Fosmid unclonability p-value | 0.943457 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTTCCTGG ACCCTGGATG GATCATCCTG ATCCTGCTCG TCGTGCTGCT GATTGCCGGG
CTGCCGATTG CCTTCGTGCT CGGCGTGACC GCGGCGGTGA TGATCCTGCT CGACCCCGCC
GTGGTGCCGC AGATCATCGG CCTGATTCCC TTCGGCGGGG CCAACAACTA CCTACTGGTG
GCGGCGTTGT TGTTCATGAT CGCGGGCGAG ATCATGAACC AGGGCAAGAT CGCAGAGAAG
CTTATTGCCT TCGCCTCCTC GCTGGTGGGC CATATCCGGG GCGGGCTGGC CCATGTGAAC
ATCCTCACCT CGCTGTTTTT CTCGGAAATC TCCGGCACCG CCACGTCGGA TGCCGCCGCC
ATCGGCTCGG TCATGATCCC CCAGATGCGC AAGCGCGGCT ACCCGGCCGC CTTCGCCGCC
GCGGTCACCT CGACCTCGGC GACCATGGCG ATCATCGTGC CGCCCTCGCT GAACCTGATC
CTGTATGCCT ATGTGGCGAA CGCCTCGATT GCCGAGCTTT TCGCCGCCGG GATCGTGCCC
GGGTTCCTCG TCTGCGGCCT GCTGATGGGC ACGGCCTATA TCATCTCGGT CAAGCGCGGC
TATCCGACCG AAGGCGCGTT TTCCTGGGGC CGCGTGGCCG AGACCGGCAA GGACGCGGCC
ATCCCCCTCA CCCTGCCGAT CCTCGTGCTC GCAGGTATCC TGGGCGGCAT CTTCACCGCG
ACCGAGGCCG GGGCCATCGC CGCCTTCTGG TCCATCGTGC TAGCCGCCTT CATCTACCGC
ACCGTGAAGC TCGGCACCCT GATCGACACC CTGCGCATCG CGGGTAAACG CTCGGCCATG
CTGATGTTCA TCGTGGCGAC CTCCACCCTG CTCGGCTGGT ACCTCACCAA CCAGCGCATC
CCCCAGGACA TCGCCGAAGG GATCCTGGGC CTGTCGGACA ACTACTGGGT GATCCTGCTG
GCGATCAACG TGTTCTTCCT GCTGGCGGGC ACCATCATCC ACGGCACGCC CGCGATCCTG
ATGCTGGTGC CGATCTTCCT TCCGCTCGCG GACCAGCTGG GTATCGACCG GGTGCATTTC
GGTCTGATCC TGACGATCAA CCTCGGCATC GGGCAACAGA CGCCGCCCGT GGCCTCGGTG
GTGCTGATCA CCTGTGCCAT CGCCAAGATT TCCATCGCCA AGATCATTCC CTCGATGCTG
ATGTTCATCG GCGCGATGCT GGTGGCCCTG TTGCTGATCA ACCTGTTCCC GGCCCTGTCG
CTGTGGTTGC CGTCGGTGAT CCTGTGA
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| Protein sequence | MFLDPGWIIL ILLVVLLIAG LPIAFVLGVT AAVMILLDPA VVPQIIGLIP FGGANNYLLV
AALLFMIAGE IMNQGKIAEK LIAFASSLVG HIRGGLAHVN ILTSLFFSEI SGTATSDAAA
IGSVMIPQMR KRGYPAAFAA AVTSTSATMA IIVPPSLNLI LYAYVANASI AELFAAGIVP
GFLVCGLLMG TAYIISVKRG YPTEGAFSWG RVAETGKDAA IPLTLPILVL AGILGGIFTA
TEAGAIAAFW SIVLAAFIYR TVKLGTLIDT LRIAGKRSAM LMFIVATSTL LGWYLTNQRI
PQDIAEGILG LSDNYWVILL AINVFFLLAG TIIHGTPAIL MLVPIFLPLA DQLGIDRVHF
GLILTINLGI GQQTPPVASV VLITCAIAKI SIAKIIPSML MFIGAMLVAL LLINLFPALS
LWLPSVIL
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