| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_0916 |
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| Symbol | |
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| ID | 5710606 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dinoroseobacter shibae DFL 12 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009952 |
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| Strand | + |
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| Start bp | 937856 |
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| End bp | 939046 |
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| Gene Length | 1191 bp |
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| Protein Length | 396 aa |
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| Translation table | 11 |
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| GC content | 70% |
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| IMG OID | 641266826 |
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| Product | efflux transporter |
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| Protein accession | YP_001532262 |
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| Protein GI | 159043468 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0845] Membrane-fusion protein |
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| TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 26 |
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| Plasmid unclonability p-value | 0.987196 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 37 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACCTTGT GTTCCTTGCT CCGCCCTCTG TATTTCATGC TCGCCCTCAT GGTTCTGCCG
ACCGTTCCGC CTCTGTTTGC GCAGGAGCGT CCTGCCGCCG TGGTGACCGA GACCGTCGAG
GAGCGCGCGC TTGCCGAGAC GTTGCCGGTC TTCGGGCAGG TCGTGGCCTC GCGCGACAGT
GCTGTGGCGT CCCGGACGGC CGGGATCGTG GACGAGGTCG CGGTGCTGGT GGGCGACCGG
GTGGCCGAGG GGGCGACCCT TGCGGTGCTC GATACCGAGC TGGCGCAGAT CGAGCTGGAG
CAAGCGCTGG CCGACATCGC CGAGGCCCGG GCCGGGATCG CCGTGGCCGA AGCACAGCTC
GGCCGCGCCG AGGATGCCCG TGACCGCGTG GAAGGGTTGC GCAACACCGC ATCGTTCAGC
TCGGCGCGGT TTGACGACGC CATGAGCGAT CTGGCGGCGG CCACGGGAGA GCTGAACCAG
GCCCGCGCGC GGCTTCTCAA TGCCGAGGCC GCCGAGCAAC GGGCGCGCTA CACCCTGGAC
CGCGCGCGGA TCACGGCCCC TTTCGCGGGG GTGGTCCTGT CGGTGGCGGC CGATCCCGGG
CAGTTTATCT CGGTCGGAGA TCCGATCGCG CGCATCATTG ATATCAATGC GTTGGAGATC
GAAGCTCAAG TTCCGTCTCA ATTCGCGCCC GCCATTCCCC CGGGGGTGAC CGTCAAGGGA
GTGAGCGAGG CGGGGCAACA GCTCGACCTG CAGATCCGCG CGATCCTGCC GACCGAGAGC
GTCTCGACCC GGACACGGCC CGTGCGGTTG TCGGGGGACC TTGACGCGCT GGGTGCGACC
CTGGCCGTGG GTCAGTCGAT CACGCTGCAA GTGCCCGTGA GCGCGCCGCG CGCAGCCCTT
GCCGTGCCGA AGGATGCGCT GGTGCAGGGC GCGCAGGGCT GGACCGTCTT CGTCGATGCC
GATGGGATCG CCGAGCCGCG CCCGGTGCGC ATCGGGGTGG CCATGGGTGA CCGGTTCGAG
GTGCTGAGCG GTCTTGCGGA GGGCGATGCC GTGGTCGTTC GGGGCAATGA GCGCCTGCGC
CCGGGCCAGG CCCTGCAGGC GGTGGACGGT GCGCCAGGCG GAGGAGCGCC CGAAGAGGGC
GCGAGGACGC CCGACGACAC CCAGTCGCGC GCCGCGCCGC AGAGCAATTG A
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| Protein sequence | MTLCSLLRPL YFMLALMVLP TVPPLFAQER PAAVVTETVE ERALAETLPV FGQVVASRDS
AVASRTAGIV DEVAVLVGDR VAEGATLAVL DTELAQIELE QALADIAEAR AGIAVAEAQL
GRAEDARDRV EGLRNTASFS SARFDDAMSD LAAATGELNQ ARARLLNAEA AEQRARYTLD
RARITAPFAG VVLSVAADPG QFISVGDPIA RIIDINALEI EAQVPSQFAP AIPPGVTVKG
VSEAGQQLDL QIRAILPTES VSTRTRPVRL SGDLDALGAT LAVGQSITLQ VPVSAPRAAL
AVPKDALVQG AQGWTVFVDA DGIAEPRPVR IGVAMGDRFE VLSGLAEGDA VVVRGNERLR
PGQALQAVDG APGGGAPEEG ARTPDDTQSR AAPQSN
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