| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_0893 |
|---|
| Symbol | |
|---|
| ID | 5710583 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dinoroseobacter shibae DFL 12 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009952 |
|---|
| Strand | + |
|---|
| Start bp | 909083 |
|---|
| End bp | 910375 |
|---|
| Gene Length | 1293 bp |
|---|
| Protein Length | 430 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 641266803 |
|---|
| Product | peptidoglycan-binding domain 1 protein |
|---|
| Protein accession | YP_001532239 |
|---|
| Protein GI | 159043445 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 0.412419 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 35 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCATATTC AAAGCGCGAT TTCGATCCTA TTGGCGGTAG CCCTTTTTGC GCCCTCAGCG
GCAAAAGCGG GGTTTCACGA AAACCTTCTT GAACAGCTTG GCCGTGAAAT CATCGACGAG
ATGTTTGAAG ACCCCCCTGC GGCGTCTCCG CCTGCGTCGC CGCCGCGCAC TGTCGAATCC
CCGCAGCGGC AGGAAAATCG GCGTGTGCAG TCCGCGCTCA ACGCGTTCGG ATTCCCGGCC
GGGGTGGTCG ATGGGGACCT GGGCCCGCGG TCGCGCGCGG CGATCGGGGC GTACCAGGCC
TTCATGGGGT TTCCGGGCAC CGGGTTTCTG GACGAGTACC AGAAGGGTGT GCTTTTGAAC
GCCCATCGCA GGTTGCAGGC CGGCGACGGT GCGGCCTTCC CGAATGTGCT GGCCGCGGAA
GGGACCAAGG GGTTGCTCAA GGCGTTCACC CCGACGGTCG GGCCGAGCAC CTATCCCGAC
CCGCAAGTGG CGCAAGGAGG CAGGATCGGC GCGCCCGGGG CCCCGTTCGG CGGACCAGAG
GATCTGGGCG TGGTGCCGGA CCTGCCGGTT GCGGTGCCGT CCTTGCCGCA GGCCGGGCCG
ACGGCCACGC GCATGTCCGA GCGGTGCGAG TTCGTGGCCC TGACGACCCG GATCAACCAG
GGGCTGATCC AGGCGGATGC GATGCTGGAT GCGGACCAGG CGCTGAGCGA GCAGTTCTGC
GAGGCGCGCA GTTTTGCCCT TGCGGCGGGC CAGAGCTATG CGGTGCAGAT CGGGTTCGAG
GAGGCGCAAC TCGTGGAGAT CTGCACGCGG ATCTCGGCGG CGCTTGGGCC GGTGCGTGCC
ATGATGGCGG GGCAGTCGGC GCAGGCGGTG CAGGCCCGGG TGGTGGAGCT CGGCGCGTCG
CTTGGCATGG CGAATCTGCC GAAACTGGCG GCCTATGGCA AGCTCTGCAC GGCGCAGGGG
TATCGCCTCG ATGATGCGGA GATCGCGCTG TCGGGGGCGC TGTTGTCCTT CGCGGCGGGG
CAGAGGCCCC ATGCGGAGCT TCTGGCGCAC CACGCGCGGG AAGGCTTCGG GCTGGCGGCG
CAGGGGGCGG CGGCGTTTTC GTGGTACGAC ATCGCCCTCG ATGCCCTGGA GCGGGGCGCG
ACACCGGCCT TCCTGCCGTC GAAATCCGCC CAGCGGGTCG CGGTCATGCG GGCGGCGATC
AAGTCCGGCC AGTTGCAAGC CGATACCGTC GGCGCGGTGC CCATGGTGCC CGCGTCGGGG
GGCGGCATTC CGGACCTGCC CTTGCCGCAG TAG
|
|---|
| Protein sequence | MHIQSAISIL LAVALFAPSA AKAGFHENLL EQLGREIIDE MFEDPPAASP PASPPRTVES
PQRQENRRVQ SALNAFGFPA GVVDGDLGPR SRAAIGAYQA FMGFPGTGFL DEYQKGVLLN
AHRRLQAGDG AAFPNVLAAE GTKGLLKAFT PTVGPSTYPD PQVAQGGRIG APGAPFGGPE
DLGVVPDLPV AVPSLPQAGP TATRMSERCE FVALTTRINQ GLIQADAMLD ADQALSEQFC
EARSFALAAG QSYAVQIGFE EAQLVEICTR ISAALGPVRA MMAGQSAQAV QARVVELGAS
LGMANLPKLA AYGKLCTAQG YRLDDAEIAL SGALLSFAAG QRPHAELLAH HAREGFGLAA
QGAAAFSWYD IALDALERGA TPAFLPSKSA QRVAVMRAAI KSGQLQADTV GAVPMVPASG
GGIPDLPLPQ
|
|---|
| |