Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Dshi_0886 |
Symbol | |
ID | 5710576 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Dinoroseobacter shibae DFL 12 |
Kingdom | Bacteria |
Replicon accession | NC_009952 |
Strand | - |
Start bp | 901082 |
End bp | 901924 |
Gene Length | 843 bp |
Protein Length | 280 aa |
Translation table | 11 |
GC content | 68% |
IMG OID | 641266796 |
Product | transcriptional regulator |
Protein accession | YP_001532232 |
Protein GI | 159043438 |
COG category | [K] Transcription |
COG ID | [COG1414] Transcriptional regulator |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 25 |
Plasmid unclonability p-value | 0.574379 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 37 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAAAGACC AGACCCCTTC TCCGCGCCGA AGCCGCGGGC GCCCCAAGAA TGCCTTTTCC GACGGGCAAT CCAGCACGAT CCAGGCCCTG GACCGCGGTT TGTCGGTCCT GAGTGCCCTG GCCCGGGACG GGGGCGGGAC GCTGTCGGAC GTGTCCATGC GCCTCGGGAT GCCCGCCTCC ACCGCGCACC GGGTGCTCGC GACCCTGGAA AAGCACGGCT ATGTCGACAT GGACGAGGCG AGCCAGACCT GGCGCGTGGG GTTGGAGGCG TTCCGGGTCG GCACCAGTTT CATGCAGCGG ACCAACCTTC TGGAAGTGGG CCGCGCCTCC ATGCGCACCT TGATGGAGCA GACCGGCGAG ACCGCCAATC TCGGCATTCT CGACAATGAC CACGTGGTCT TCATCGGCCA GGTGGAGACC CACAACCCGA TCCGGGCCTT CCACCGGCCG GGCTCCAGCG GGCCGATGCA TGCGTCTGGA ATCGGCAAGG CGCTGCTGGC GGCGATGCCG CAGGGTGCGG TGGAAAACCT GTTTCGGCGC ACTGGGTTGC AGCAATTCTC GCCCAAGACC CTGACCGACC CGGAGGCGTT GCTGAGCGAC CTGCGGATCA CCCGCAAGCG GGGCTGGTCC TTCGATAACG AGGAACGCTA CGAGGGCATG TGCTGCGTGG CGGCGGTGAT CTATGACAGC TTCCGGGAGC CGATCGCCGG GATCTCGGTT TCCGGCCCTT CGGCGCGCTT CGCCCCCGGG GCCCTGCCCG CCCTCGGGGC GGCGGTGCAG ACCGCCGCGC GGGACGTCAC CGCCCAGATC GGCGGGGAGA TGCCGCAGAT CGCCGCCGAA TAG
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Protein sequence | MKDQTPSPRR SRGRPKNAFS DGQSSTIQAL DRGLSVLSAL ARDGGGTLSD VSMRLGMPAS TAHRVLATLE KHGYVDMDEA SQTWRVGLEA FRVGTSFMQR TNLLEVGRAS MRTLMEQTGE TANLGILDND HVVFIGQVET HNPIRAFHRP GSSGPMHASG IGKALLAAMP QGAVENLFRR TGLQQFSPKT LTDPEALLSD LRITRKRGWS FDNEERYEGM CCVAAVIYDS FREPIAGISV SGPSARFAPG ALPALGAAVQ TAARDVTAQI GGEMPQIAAE
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