| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_0858 |
|---|
| Symbol | |
|---|
| ID | 5710548 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dinoroseobacter shibae DFL 12 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009952 |
|---|
| Strand | - |
|---|
| Start bp | 874196 |
|---|
| End bp | 874888 |
|---|
| Gene Length | 693 bp |
|---|
| Protein Length | 230 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 74% |
|---|
| IMG OID | 641266768 |
|---|
| Product | ABC transporter related |
|---|
| Protein accession | YP_001532204 |
|---|
| Protein GI | 159043410 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0410] ABC-type branched-chain amino acid transport systems, ATPase component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 24 |
|---|
| Plasmid unclonability p-value | 0.269038 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 29 |
|---|
| Fosmid unclonability p-value | 0.152569 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGAGCCCGC TGGTGCAGAT CGAGGGCGTG ACCGCCGCCT ATGGCGCATC CCAGGCGCTG
TTCGGGGTGG ACCTGACCCT GAAAGAGGGC GGGGCGCTGG CCCTGATGGG GCGCAACGGC
ATGGGCAAGA GCACGACGCT CAAGACCCTG TGCGGACTGC TGCCGCCGAC CGGCGGCCGC
GTGCGCCTGG CGGGGGTGGA GATCACCGGG CGGCCCGCGC ACCGGATCGC GCGGCTCGGG
GTCGGGCTGG TGCCCGAGGG GCGTCGGTGT TTCGCGCCGC TGACCGTGGC GGAGAACCTG
TTGGCCGCGG CACGTCCGGG GCCGTGGGAC ATGGCGCGGG TGGGCGCGCT TTTCCCGCGG
CTGGCCGAGC GCCGGGACCA GGTGGCGCGG TCGCTCTCGG GGGGCGAGCA GCAGATGCTG
GCGATCGGGC GGGCGCTGAT GACGAACCCG CGGCTTCTGG TGCTGGACGA GGCCACCGAG
GGGCTGGCCC CGGTGGTCCG GCAGGAGATC TGGGCGGCCA TCGCGCGGCT GCGCGCGGAA
GGCGGGCTGA GCCTGATCCT GGTGGACAAG TCCCTGCGGG AGTTGCGGCA GGTGGCCGAT
ACGGCGGTCA TCCTCGCCCG GGGCAGGACG GTCTGGTCCG GTTCGATCGA CGCGCTTGGG
GCCGAGCAAA CCAACCGCTG GCTGGGCGTG TAG
|
|---|
| Protein sequence | MSPLVQIEGV TAAYGASQAL FGVDLTLKEG GALALMGRNG MGKSTTLKTL CGLLPPTGGR
VRLAGVEITG RPAHRIARLG VGLVPEGRRC FAPLTVAENL LAAARPGPWD MARVGALFPR
LAERRDQVAR SLSGGEQQML AIGRALMTNP RLLVLDEATE GLAPVVRQEI WAAIARLRAE
GGLSLILVDK SLRELRQVAD TAVILARGRT VWSGSIDALG AEQTNRWLGV
|
|---|
| |