| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_0857 |
|---|
| Symbol | |
|---|
| ID | 5710547 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dinoroseobacter shibae DFL 12 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009952 |
|---|
| Strand | - |
|---|
| Start bp | 870602 |
|---|
| End bp | 873940 |
|---|
| Gene Length | 3339 bp |
|---|
| Protein Length | 1112 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 70% |
|---|
| IMG OID | 641266767 |
|---|
| Product | transglutaminase domain protein |
|---|
| Protein accession | YP_001532203 |
|---|
| Protein GI | 159043409 |
|---|
| COG category | [E] Amino acid transport and metabolism
[S] Function unknown |
|---|
| COG ID | [COG1305] Transglutaminase-like enzymes, putative cysteine proteases
[COG4196] Uncharacterized protein conserved in bacteria |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 0.250645 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 29 |
|---|
| Fosmid unclonability p-value | 0.314962 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCCATCA CGGCCAGCAT CTATCACCTG ACCCATTACA AGTACGATCG CCCCGTGACA
CTCGGGCCGC AGATCATCCG CCTGCGCCCG GCGCCGCACA GCCGGACCCG GGTGATCTCC
CACGCGCTGA AGGTGTCGCC CGAGGGGCAT TTCGTGAACC ACCAGCAGGA CCCCTATGGC
AACTGGATGG CGCGCTTCGT CTTCCCGGAG CCGGTGCGGG AGCTGAAGAT CGAGGTCGAC
CTGGTCGCGG ACATGTCGGT CTACAACCCG TTCGACTTCT TCGTGGAGGA CACCGCCGAG
GAATGGCCCT TTGCCTATCC CGAGGATCTC GCCGCGGATC TGAGCATCTA CAAGGCGCCC
GAGGCGGCGG GGCCGCGCCT GCGGGCCTAT CTCGACGCGC TGCCGCGGGA CACGTCGCGG
ACGGTGGATT TCCTCGTCGG GCTGAACGCG CGGATCGCGC GGGATATCGG CTATGTCATC
CGGATGGAGC CGGGGGTGCA GACCGCTGAA GAGACCCTGA CCGTGGGCAA GGGGTCGTGC
CGGGACAGCT CCTGGCTGCT GATCCAGATC CTGCGGCACC TGGGCTTCGC GGCGCGGTTC
TGTTCGGGCT ACCTGATCCA GTTGAAACCG GATCTCGAGG CGCTGGACGG CCCGTCGGGG
ACGGATCACG ATTTTACCGA CCTGCATGCC TGGGCCGAGG TGTACCTGCC CGGCGCGGGG
TGGATCGGGC TCGACCCCAC CAGCGGGCTT CTGGCGGGCG AGAGCCACAT CCCGCTGGCC
GCCACCCCCC ATTACCGCAA CGCCGCCCCG ATTGCCGGCG TGGCCAGTGC CGCCAATGTC
GAGTTCAACT TCGACATGCA GGTCACGCGC ACCGCCGAGC ATCCGCGCAT CACCAAGCCG
TTTTCCGATA CCGCGTGGGA GGCTCTGAAC GATCTGGGCC GCAAGGTCGA CGCCAAGCTC
GATGCCGGCG ACGTGCGGCT GACCATGGGG GGCGAGCCGA CCTTCGTGTC GATCGACGAT
TTCGAGAGCG CGGAATGGAA CACCGCTGCC GTGGGCCCGA CCAAGCGGGC GCTGGCCGAT
ACGCTGATCC GGCGGTTGCG CGACCGCTTT GCGCCGGGCG GGTTTCTGCA TTACGGGCAG
GGCAAGTGGT ATCCGGGGGA GACCCTGCCG CGCTGGACCT TCTCGCTCTA CTGGCGCGGG
GACGGCAAGC CGCTCTGGAC CAATGCGGAC CTGATCGCGC GGGAGAAGAC CGACGCCACC
CCCGGCCCGG AGGCGGCCGA ATCCCTGCTG TCGGGCATCG CGGCAGCCCT TGGCGTGCCC
GAGGACAACG TGACCCCCGC CTATGAGGAC CCGGCCGAGT GGCTGGTGCG CGAGGCGCAG
CTGCCCGAGA ACGTGAGCCC CGAGAATTCC AAGCTGAAAG ACCCCGAAGA GCGCCACCGC
ATCGCGCGGG TGTTCGAGCG CGGCCTGACC GAGCCGTCGG GCTACGTCCT GCCGGTGCAG
CGCTGGCAGG CGAAGGCGGG CGCGGGCTGG CGCTCGGAGC GCTGGTCGCT CCGGCGTGGC
AAGCTGTTCC TGACCCCGGG CGACAGCCCC GTGGGCTACC GGCTGCCCCT GGGCTCCCTG
CCGCATGTGC CGGCGGCCAG CTACCCCTAC ACCTATCCGG CCGACCCGTT TGCGGAGCAG
GCCCCCCTGC CCGAGCCCGA CCTCGTGGCG CGCGAAGCCG AGCGTCTGCG CGACCGGCGC
GAACGCGCCC CTGCCAGCAG CACAGCCTCC GAAGGCGGCG AGACCCAGAC CGCGCAGTAC
CTGACCGAGA TCGGCGGCCC GGTGCGCACC GCGATCAGCG TCGAGCCGCG CGAGGGCAAG
CTCTGCGTCT TCCTGCCGCC GGTGGAGTCG GCGGCGGATT ACCTCGAGTT GCTCGCCGCG
ACCGAAGCCG CCGCCACCGC CCAGGGCACG CCCGTCCATA TCGAAGGTTA CGCGCCGCCG
GGCGACAGCC GCCTCAACGT GATCCGCGTG GCCCCGGACC CGGGCGTGAT CGAGGTGAAC
GTCCATCCCG CGCACAGCTG GGACGACTGC GTCGCGATCA CCGAAGCGGT CTATGAAGAG
GCGCGGCAAG CCCGGCTTGG CGCGGACAAG TTCATGATCG ACGGGCGCCA TACCGGCACC
GGCGGCGGCA ACCATGTGGT CGTCGGCGGG GCCACCCCCG AGGACAGCCC CTTCCTGCGG
CGCCCGGACC TGCTGCGCTC GCTGATCCTG CACTGGAACC GGCATCCGAG CCTCTCTTAC
CTGTTCTCCG GCGTTTTCGT GGGCCCCACG AGCCAGGCGC CGCGCATCGA CGAGGCCCGG
CATGACAGCC TTTACGAGTT GGAAATCGCG CTCGCCAACA TCCCCGATCC GGACAAGGGC
GCGGCCCCGA CGCCCTGGCT GGTGGACCGG CTCTTGCGCA ACGCGCTGAT CGACGTGACG
GGCAACACGC ACCGGTCCGA GATCTGCATC GACAAGCTCT ATTCCCCCGA CGGCCCCACG
GGGCGACTGG GCCTCGTGGA GTTCCGCGGC TTCGAGATGC CGCCCAACCC GCGTATGTCG
CTGGCCCAGC AGGTGTTGAT CCGCGCCCTT ATCGCCCGGT TCTGGGAGGC GCCGCTGTCG
GGGCCGCTGA CCCGCTGGGG CACGCAGCTC CATGACCGGT TCATGCTGCC CCATTTCCTG
TGGGAGGATT TCACCGAGGT CTGCCGCGAT CTGGCCGCGC ACGGCCTGCC CGTGGACCCG
GCCTGGTTCA CCGCCCAGTC GGAGTTCCGC TTCCCGTTTT GCGGCGAGGT CACGTACGAG
GGCATGACGC TGGAGCTGCG CCAGGCGCTG GAGCCGTGGC ATGTGCTGGG CGAGACGGGG
GCGATCGGCG GCACGGTGCG CTACACCGAC AGTTCGGTGG AGCGCTTGCA GGTCAAGCTG
ACCGGGGCGG ACCCCGCGCG CTACACCGTG ACCGCCAATG GCCGCCGCGT GCCCCTGCGC
CCGACCGCCT GCCCCGAAAC CCGGGTGGCG GCGGTCCGCT ACAAGGCGTG GCAACCGGCC
GAGAGCCTGC ATCCGACCCT GCCCGTGCAG GCCCCGCTGA CCTTCGACAT CTTCGACAGC
TGGACCGGGC GGGCCCTGGG CGGCTGCCGC TACCACGTGG CCCATCCGGG CGGGCGCAAT
TACGACACCT TTCCGGTCAA CGGCAACGAG GCCGAGGCCC GCCGCCTTGC CCGGTTCGAA
GCGCACGGTC ATACTGCAGG CGACCACACG CCGCTTGCGG AAACCCCGCA CCCGGAATTC
CCGATGACAC TGGACCTGAG ACGGCCCCCG AATGTCTGA
|
|---|
| Protein sequence | MSITASIYHL THYKYDRPVT LGPQIIRLRP APHSRTRVIS HALKVSPEGH FVNHQQDPYG
NWMARFVFPE PVRELKIEVD LVADMSVYNP FDFFVEDTAE EWPFAYPEDL AADLSIYKAP
EAAGPRLRAY LDALPRDTSR TVDFLVGLNA RIARDIGYVI RMEPGVQTAE ETLTVGKGSC
RDSSWLLIQI LRHLGFAARF CSGYLIQLKP DLEALDGPSG TDHDFTDLHA WAEVYLPGAG
WIGLDPTSGL LAGESHIPLA ATPHYRNAAP IAGVASAANV EFNFDMQVTR TAEHPRITKP
FSDTAWEALN DLGRKVDAKL DAGDVRLTMG GEPTFVSIDD FESAEWNTAA VGPTKRALAD
TLIRRLRDRF APGGFLHYGQ GKWYPGETLP RWTFSLYWRG DGKPLWTNAD LIAREKTDAT
PGPEAAESLL SGIAAALGVP EDNVTPAYED PAEWLVREAQ LPENVSPENS KLKDPEERHR
IARVFERGLT EPSGYVLPVQ RWQAKAGAGW RSERWSLRRG KLFLTPGDSP VGYRLPLGSL
PHVPAASYPY TYPADPFAEQ APLPEPDLVA REAERLRDRR ERAPASSTAS EGGETQTAQY
LTEIGGPVRT AISVEPREGK LCVFLPPVES AADYLELLAA TEAAATAQGT PVHIEGYAPP
GDSRLNVIRV APDPGVIEVN VHPAHSWDDC VAITEAVYEE ARQARLGADK FMIDGRHTGT
GGGNHVVVGG ATPEDSPFLR RPDLLRSLIL HWNRHPSLSY LFSGVFVGPT SQAPRIDEAR
HDSLYELEIA LANIPDPDKG AAPTPWLVDR LLRNALIDVT GNTHRSEICI DKLYSPDGPT
GRLGLVEFRG FEMPPNPRMS LAQQVLIRAL IARFWEAPLS GPLTRWGTQL HDRFMLPHFL
WEDFTEVCRD LAAHGLPVDP AWFTAQSEFR FPFCGEVTYE GMTLELRQAL EPWHVLGETG
AIGGTVRYTD SSVERLQVKL TGADPARYTV TANGRRVPLR PTACPETRVA AVRYKAWQPA
ESLHPTLPVQ APLTFDIFDS WTGRALGGCR YHVAHPGGRN YDTFPVNGNE AEARRLARFE
AHGHTAGDHT PLAETPHPEF PMTLDLRRPP NV
|
|---|
| |