Gene Dshi_0852 details

Gene Information

• Locus tag: Dshi_0852
• Symbol: msbA
• ID: 5710542
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Dinoroseobacter shibae DFL 12
• Kingdom: Bacteria
• Replicon accession: NC_009952
• Strand: +
• Start bp: 863045
• End bp: 864853
• Gene Length: 1809 bp
• Protein Length: 602 aa
• Translation table: 11
• GC content: 67%
• IMG OID: 641266762
• Product: lipid A ABC exporter family
• Protein accession: YP_001532198
• Protein GI: 159043404
• COG category: [V] Defense mechanisms
• COG ID: [COG1132] ABC-type multidrug transport system, ATPase and permease components
• TIGRFAM ID: [TIGR02204] ABC transporter, permease/ATP-binding protein

Plasmid Coverage information

• Num covering plasmid clones: 11
• Plasmid unclonability p-value: 0.00564413
• Plasmid hitchhiking: No
• Plasmid clonability: decreased coverage

Fosmid Coverage information

• Num covering fosmid clones: 28
• Fosmid unclonability p-value: 0.170216
• Fosmid Hitchhiker: No
• Fosmid clonability: normal

Sequence

Gene sequence

ATGGCCCGAC AATCCGCGCC CGCCGCGCCA CAGACCGCTG AAGAAGAGCG CGCGAAGTCG 
AAGAATATCG GCGCGCTCAA GACGCTGTTT CCCTATATCG CCCCGTACAG GACCCTGCTG 
GTTTCCGCAG GCGTGGTCCT CGTTCTCACG GCGTTCTTGT CGCTGCTGCT GCCGATGGCG 
GTGCGCCGGG TGGTGGACGG GTTCGACGCG CGCGATACCG CCCTTCTGGA CCAGTATTTC 
GGCGCGGCGA TTGCGGTGGC AGCCCTACTC GCCCTCGGGA CGGGCTTGCG CTACTACCTC 
GTGACGCGGC TGGGCGAGCG GGTCGTGGCC GACATCCGCA AGTCGGTGTT CGACCGGACC 
CTGGGCATGA GCCCGGCCTT CTTCGAGAAG ATCATGACCG GCGAGGTGCT CAGCCGCCTG 
ACCACGGACA CGACGCTGAT CCTGTCGGTG ATCTCGTCCT CGGTGTCGAT CGCGCTGCGC 
AACTTCCTGA TCCTGATCGG CGGCATGATC CTGATGTTGC TGACTTCGGG CAAGTTGACG 
GGGCTGGTGC TACTCCTTGT GCCGCTGGTG CTGGTGCCGA TCGTGGTTCT GGGGCGCAAG 
CTGCGCAAGC TCAGCCGGAT CAACCAGGAC TGGATCGCGG CCAGTTCGGG CAATGCCTCC 
GAGGCGCTGA CATCAGTGCA GACCGTGCAG GCCTTCACCC ATGTCCGCGA AAGCCGCGCC 
GAGTTCGACC GCATGACCGA GCTGTCCTTC GACAGCGCCA AGCAGCGGAT CGGGGTGCGC 
GCGGCGATGA CCGTGATCGT GATCTTCCTG ATCTTCACGG GCATCGTCGG GGTGTTGTGG 
ATGGGCGCGC GCGACGTGCG CGACGCGCTG ATGACGCCGG GGGAGCTGGT GCAATTCGTG 
ATCTATGCGA TCATGGTGGC GGGCTCCGTC GGTGCGCTGT CCGAGATCTG GGGCGAGTTG 
CAGCGCGCGG CCGGCGCCAC CGAGCGGCTG GTGGAGCTCC TGACCATGAA GGACACGGTG 
GAGGACCCCG AAAACCCCCG CCCGATGCCG GCCAACTGCG AGGGGCGCAT CACCTTCGAG 
GATGTCAGCT TCACCTATCC CGCGAGGCCG GGGACCCCAG TTCTGGACGA GATCGCTTTC 
GATATCAGGC CGGGCGAGAC CGTGGCGCTC GTGGGCCCGT CCGGTGCGGG CAAGTCGACC 
ATCCTGCAAC TGCTGCTGCG GTTCTTCGAT CCCGACGAGG GCCGGATCAA GCTGGACGGG 
ATCGACCTGC GCGACGCCAG GCGCGACGAT TTCCGCCGCA AGATCGCCTT CGTGCCCCAG 
GACGCGGTGA TCTTCGCCAC CTCGGCGCGG GAGAATATCC GCTTCGGGCG GCCCGACGCC 
ACCGATGCCG AGGTGGAGGC CGCGGCCAAG GCGGCGGCAG CGGACGAGTT TCTGTCCCGT 
CTGCCCGATG GCTACGAGAC CTTCGTGGGC GAGCGGGGCG TGATGCTCTC CGGTGGGCAG 
AAACAGCGCA TCGCGATTGC CCGCGCGATC CTGCGGGATG CGCCCGTGCT TCTGCTGGAC 
GAGGCGACCT CGGCGCTCGA CGCGGAATCC GAGCAGGCGG TGCAGCACGC GGTCGAGCAG 
CTATCCGAGG GGCGCACGAC CCTGATCGTG GCACACCGGC TCGCGACGGT GAAAAAGGCC 
GACCGCATCC TGGTGTTCGA GCGGGGCCGG ATCGTGGCCG AGGGCACCCA TGATGCCCTG 
GTGGCCCAGG GCGGGCTTTA TGCCCGTCTC GCCCGGCTGC AATTCACCGC CGGACTGGCG 
GCGGAGTAA 

 

Protein sequence

MARQSAPAAP QTAEEERAKS KNIGALKTLF PYIAPYRTLL VSAGVVLVLT AFLSLLLPMA 
VRRVVDGFDA RDTALLDQYF GAAIAVAALL ALGTGLRYYL VTRLGERVVA DIRKSVFDRT 
LGMSPAFFEK IMTGEVLSRL TTDTTLILSV ISSSVSIALR NFLILIGGMI LMLLTSGKLT 
GLVLLLVPLV LVPIVVLGRK LRKLSRINQD WIAASSGNAS EALTSVQTVQ AFTHVRESRA 
EFDRMTELSF DSAKQRIGVR AAMTVIVIFL IFTGIVGVLW MGARDVRDAL MTPGELVQFV 
IYAIMVAGSV GALSEIWGEL QRAAGATERL VELLTMKDTV EDPENPRPMP ANCEGRITFE 
DVSFTYPARP GTPVLDEIAF DIRPGETVAL VGPSGAGKST ILQLLLRFFD PDEGRIKLDG 
IDLRDARRDD FRRKIAFVPQ DAVIFATSAR ENIRFGRPDA TDAEVEAAAK AAAADEFLSR 
LPDGYETFVG ERGVMLSGGQ KQRIAIARAI LRDAPVLLLD EATSALDAES EQAVQHAVEQ 
LSEGRTTLIV AHRLATVKKA DRILVFERGR IVAEGTHDAL VAQGGLYARL ARLQFTAGLA 
AE