| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_0828 |
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| Symbol | deoA |
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| ID | 5711454 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dinoroseobacter shibae DFL 12 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009952 |
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| Strand | + |
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| Start bp | 835752 |
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| End bp | 837059 |
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| Gene Length | 1308 bp |
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| Protein Length | 435 aa |
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| Translation table | 11 |
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| GC content | 74% |
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| IMG OID | 641266737 |
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| Product | thymidine phosphorylase |
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| Protein accession | YP_001532174 |
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| Protein GI | 159043380 |
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| COG category | [F] Nucleotide transport and metabolism |
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| COG ID | [COG0213] Thymidine phosphorylase |
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| TIGRFAM ID | [TIGR02643] thymidine phosphorylase
[TIGR02644] pyrimidine-nucleoside phosphorylase |
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Plasmid Coverage information |
| Num covering plasmid clones | 23 |
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| Plasmid unclonability p-value | 0.61021 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 42 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGACCGCGC GGACGGTGAT CGCGGCGGTG CGGGACGGCG CGCCGGTGGT GGCGGAGGAC
CTGCGCGCCT TCGCCCGGGG CCTCGCCTCC GGCACGGTCA GCGATGCCCA GGCCGGGGCC
TTCGCCATGG CGGTCCTGTT GCGGGGCTTG GGCGATGCGG GGCGCGTGGC GCTGACGCAA
GCCATGCGCG ACAGTGGCGA TGTGCTGGCC TGGGACCTGC CCGGGCCGGT GCTCGACAAG
CATTCCACGG GCGGGATCGG GGATACGGTG TCGCTCCTGC TGGCCCCGGC GCTGGCGGCC
TGCGGGGCTT ACGTGCCGAT GATCTCGGGC CGGGGGCTGG GTCATACGGG CGGCACGCTC
GACAAACTCG AGGCGCTGGA GGGCTACCGC ACCGACATTT CCGAGGATGC GCTGAGGGCG
GTGGTGGCCG AGACCGGCTG CGCCATCGTC GGGGCCACGG GCCAGATCGC GCCCGCGGAC
CGGCGGCTCT ATGCCATCCG CGACGTCACC GCCACGGTCG AAAGCATCGA CCTGATCACC
GCCTCGATCC TGTCCAAGAA GCTCGCGGCG GGGCTGGGCG GGCTGGTGCT GGATGTCAAA
TGCGGCTCGG GCGCGTTTCT GACCGACCCC GCAGCGGCCC GGGATCTGGC GCAGGCGCTG
GTGCGCACGG CCAATGGCGC GGGCTGTCCC ACCTGGGCGC TGCTGACGGA TATGGATGAG
AGCCTCGCCA GTGCCGCGGG CAATGCGCTG GAGGTGGCGG AGGTGCTGCG TATCCTGCGG
GGCGACGCGA CGAGCCCGCG CCTGCGCGCG GCGACCGTGG CCCTGGGCGG GGCGCTGCTG
GCCCTGGGCG GGCTGGCGGA CGACCCCGCG GACGGGGCTG CACGGATCGA CGCCACCCTG
CGCGATGGCC GCGCGGCGGA GGTTTTCGCC CGCATGGTCG CTGCCCTTGG CGGGCCGCGC
GACGTGGTGG CCACGGGCCT TGCCGGTTTG CCCGAGGCGC CGGTGGTGCG CGAAGTGCCC
GCACCCGCGG CGGGCGTGCT GACCGCCTGC GATGCCAAGG CGCTGGGCTG GGCGGTGGTG
TCCCTGGGCG GCGGACGGCA GGTGGAAACC GACCCGGTCG ACCCGGCGGT GGGCCTGTCG
GATATCGCCC CGCTCGGCAC CCGCGTCGTC CGGGGCGAGC CCATCGCCCG GGTCCATGCC
GCCCGCGAAG AGGCCGCCGA CCGCGCCGTG GCCGAGGTTC AGGCGGCCTT CACCCTCGGC
ACGAGTTTCG ACGCGAAGCC GCTTGTCCTC GGAGAGGTCC GCCCATGA
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| Protein sequence | MTARTVIAAV RDGAPVVAED LRAFARGLAS GTVSDAQAGA FAMAVLLRGL GDAGRVALTQ
AMRDSGDVLA WDLPGPVLDK HSTGGIGDTV SLLLAPALAA CGAYVPMISG RGLGHTGGTL
DKLEALEGYR TDISEDALRA VVAETGCAIV GATGQIAPAD RRLYAIRDVT ATVESIDLIT
ASILSKKLAA GLGGLVLDVK CGSGAFLTDP AAARDLAQAL VRTANGAGCP TWALLTDMDE
SLASAAGNAL EVAEVLRILR GDATSPRLRA ATVALGGALL ALGGLADDPA DGAARIDATL
RDGRAAEVFA RMVAALGGPR DVVATGLAGL PEAPVVREVP APAAGVLTAC DAKALGWAVV
SLGGGRQVET DPVDPAVGLS DIAPLGTRVV RGEPIARVHA AREEAADRAV AEVQAAFTLG
TSFDAKPLVL GEVRP
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