| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_0827 |
|---|
| Symbol | cdd |
|---|
| ID | 5711453 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dinoroseobacter shibae DFL 12 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009952 |
|---|
| Strand | + |
|---|
| Start bp | 835363 |
|---|
| End bp | 835755 |
|---|
| Gene Length | 393 bp |
|---|
| Protein Length | 130 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 72% |
|---|
| IMG OID | 641266736 |
|---|
| Product | cytidine deaminase |
|---|
| Protein accession | YP_001532173 |
|---|
| Protein GI | 159043379 |
|---|
| COG category | [F] Nucleotide transport and metabolism |
|---|
| COG ID | [COG0295] Cytidine deaminase |
|---|
| TIGRFAM ID | [TIGR01354] cytidine deaminase, homotetrameric |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 28 |
|---|
| Plasmid unclonability p-value | 0.577908 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 42 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGAGCTGA TGGAGGCCGC GCGCGCGGTT CGCGAAAACG CCTACGCGCC CTATTCCGAG
TTCAAGGTGG GGGCCGCGAT CCGGGCCGCA TCGGGGGCGG TCTATACCGG GTGCAACGTG
GAAAACGTGG CCTATCCCGA GGGCACCTGC GCCGAGGCGG GCGCGATCGC GGCCATGGTC
GCGGCGGGCG AGACCGTTCT GACCGAGGTC GCGGTGATCG CCGACAGCCC CAGCCCCGTG
CCCCCCTGCG GCGGCTGCCG CCAGAAGCTG CGCGAGTTCG GCGCGCCGGA GACGGTCGTG
ACCCTTGGCA CCACCGGCGG CGCGCGGGCC AGCATGACCC TGTCGGAGCT ACTGCCCGGC
GCCTTCGATC AGAGCCACAT GGCCGCCCCG TGA
|
|---|
| Protein sequence | MELMEAARAV RENAYAPYSE FKVGAAIRAA SGAVYTGCNV ENVAYPEGTC AEAGAIAAMV
AAGETVLTEV AVIADSPSPV PPCGGCRQKL REFGAPETVV TLGTTGGARA SMTLSELLPG
AFDQSHMAAP
|
|---|
| |