| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_0801 |
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| Symbol | |
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| ID | 5711237 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dinoroseobacter shibae DFL 12 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009952 |
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| Strand | - |
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| Start bp | 807171 |
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| End bp | 808529 |
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| Gene Length | 1359 bp |
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| Protein Length | 452 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 641266710 |
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| Product | TRAP C4-dicarboxylate transport system permease DctM subunit |
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| Protein accession | YP_001532147 |
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| Protein GI | 159043353 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG1593] TRAP-type C4-dicarboxylate transport system, large permease component |
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| TIGRFAM ID | [TIGR00786] TRAP transporter, DctM subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 0.262699 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 38 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACCGATG GCACGCTTGT CACGCTGATC TCCGTCGGGG TCACGTTTCT GTTCATGCTG
GGGGTCCCGG TGTTCCTGGT CATCGCCTAT TGGGTGATCG GCTGTTCCTT CGTGCTGGGC
CTGACGCTGG ACAACATGGG GGCGGAGATC CTCAACGTGT TCAACAAGGG CTTTGCCCTG
CTGGCCATGC CCCTGTTCAT CCTGACGGGG GACCTGATCA ACAAGTCCGG CATCGCCCGG
CGGCTATCGG ATTTCGCCTA TGCCTGCCTC GGCTGGCTGC GGGGCGGTCT GGCAATGGCG
TCCCTGGGTG CCTGCGGCCT GTTCGCGGCG ATCTCGGGGT CGAACTCGGC CACCACGGCG
ACCATCGGGT CCATGCTGCA TCCCGAGATG GTCAAGGGCG GTTATGACGA GCGGTTCTCG
GCGGCCACGG CGGCGGCGGG CGGTACGGTG GGGATCATCA TTCCGCCCTC GATCATCTTC
ATCGTCTACG GGTTCCTGAT GAACCTGCCG ATTTCGGACC TTTTCGTCGC CGGCATCATC
CCCGGCGCAC TGATGGTGAT CGGCATGCAG CTGGCCTGCT GGATCATCTG CCGGATCAAC
GGCTGGGGCT TCATCATCCC GCTGCAACTG AACCGGGTGC TCAAGACCGC CTTCGGCGCG
TGGCTAGGCT TCTTCGCCAT CGGTCTGGTG CTGTGGGGGA TCTACACCGG CAAGTTCTCC
CCCACCGAGG CCGCCGGGGT CACGGTCGGG TTCTGCGTGA TCGCGGGGCT GGTGTCGTGG
GTTTTGACGC GGGTGCTGCG GCTGCGGTCG GACAAGACCT GGGAAGAGAA GAGCTATGGC
GAGATGCTGG TGGTGGAGGG CTTCACCCTG CGCCAGATCC CTGGCATCAC CATGCGTTCG
GCCGAGATCA CCGGCATCCT TGCCCCCCTG ATCGCCATTT CGGTGGTGAT GCAGCAGATC
CTGTCGCTGC TGGGGGCGCA GCAGGTGATC GGGGATTTCG TCACGTCGAT GGGCGGCTAC
CACGCGGTGC TGTTCACGGC GATGGTGATC GTGTTCTTCT CGGGCATGGT GCTGGAGAGC
CTGCCGGTGA CGATCATCCT GGCGCCGATC CTGGCGCCGA TTGCCGCCAG CGTCGGGGTC
GATCCGATCC ATTTCGCGGT GATCTTCCTG GTAGGCGCCT CCATCGGGTT CATCACGCCG
CCTTACGGGC TCAATCTTTA TGTCGCCTCG GGGGTGACGG GGGTGCCCTA TTTCCGGCTG
CTGCGTTACA CGGTGCCGTA TCTCGTGGCG CTGATCTCCG TTTGGATCCT TGTCTCCCTG
ACCCCGGAGC TGGCATTGTT CCTGCTGCCC AACCGCTAA
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| Protein sequence | MTDGTLVTLI SVGVTFLFML GVPVFLVIAY WVIGCSFVLG LTLDNMGAEI LNVFNKGFAL
LAMPLFILTG DLINKSGIAR RLSDFAYACL GWLRGGLAMA SLGACGLFAA ISGSNSATTA
TIGSMLHPEM VKGGYDERFS AATAAAGGTV GIIIPPSIIF IVYGFLMNLP ISDLFVAGII
PGALMVIGMQ LACWIICRIN GWGFIIPLQL NRVLKTAFGA WLGFFAIGLV LWGIYTGKFS
PTEAAGVTVG FCVIAGLVSW VLTRVLRLRS DKTWEEKSYG EMLVVEGFTL RQIPGITMRS
AEITGILAPL IAISVVMQQI LSLLGAQQVI GDFVTSMGGY HAVLFTAMVI VFFSGMVLES
LPVTIILAPI LAPIAASVGV DPIHFAVIFL VGASIGFITP PYGLNLYVAS GVTGVPYFRL
LRYTVPYLVA LISVWILVSL TPELALFLLP NR
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