| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_0709 |
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| Symbol | atoDA |
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| ID | 5711144 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dinoroseobacter shibae DFL 12 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009952 |
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| Strand | + |
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| Start bp | 716718 |
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| End bp | 718664 |
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| Gene Length | 1947 bp |
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| Protein Length | 648 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 641266617 |
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| Product | acyl CoA:acetate/3-ketoacid CoA transferase, alpha and beta subunit |
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| Protein accession | YP_001532055 |
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| Protein GI | 159043261 |
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| COG category | [I] Lipid transport and metabolism |
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| COG ID | [COG4670] Acyl CoA:acetate/3-ketoacid CoA transferase |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 22 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 52 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCCGAACA AACAGATTTC GGCCGCGGCG GCGGCGGAGC TGGTCCGCGA CGGGGATACG
GTGACGACCT CCGGCTTCGT TGGGATCGGT GTGCCGGAGG AATTGCTCGT GGCGCTGGAG
ACCCGGTTCG TCGAGACCGC GCACCCGCGG GACCTGACGC TGTTTTTTGC GGCGGGCCAA
GGGGACGGCA AGGACAGGGG GCTGAACCGT CTGGGCCACG AAGGATTGCT GGCGCGGGTG
ATTGGGGGCC ACTGGGGGCT GATCCCCAAG GTGGCGGCCC TGGCCACGGC GGGCAAGATC
GCGGCCTATA ACCTGCCCCA GGGGGTGATC AGTCACCTTT ATCGCGACAT CGCCGCGGGC
CGGCCCGGCA CGCTCAGCCG GGTGGGGCTG GGCACCTTCG TCGACCCGCG CCTGGAGGGG
GGCAAGATCA ACGATGTCAC CCATGACGAG ATCGTCTCGG TGATGGAGGT AGGCGGGGCG
GAACACCTGT TCTACCGCGC CCTGCCGGTG CATGTGGCCT TGCTGCGCGG CACCTCCGCC
GACCCGGCGG GCAATATCTC GATGGAGCGC GAGGCGCTGG TGATCGACAA CCTTGCACAA
GCCATGGCGG CGAAAAACTC CGGCGGGGTG GTGATCGTGC AGGTCGAGCG CATGGTGGCG
CGCCACGGGC TCAACCCGCG CGACGTGGTG ATCCCCGGGG CGCTGGTGGA CGCGGTGGTG
GTGGCCGCCC CCGAGAACCA CCACCAGACC TTCGCCACGC CCTACAGCCA CGCGTTTTCC
GGTCAGTTCC GGGTGGAGGC GGACACCGTG CCCGAGATGC CGTTGACCCC GCGCAAGGTG
ATCGCCCGGC GCGCGGCCTT CGAGTTGCCG ATCAACGGGG TGGTGAACCT CGGGATCGGG
ATGCCCGAGG GGGTGGCCGC CGTGGCCGGG GAGGAGAAGC TCTTGCCGCA TCTGACCCTG
ACCGCCGAGC CGGGGGTGAT CGGCGGGCAG CCGGCCTCGG GGCTGGATTT CGGAGCCGCG
GTGAATACGG ACGCGATCGT GCCGCAATCG GCGCAGTTCG ATTTCTACGA TGGCGGGGGG
CTGGATATCG CGGTGCTGGG CATGGCGCAG GTGGACGCGC GCGGCAATGT GAACGTCTCG
CGTTTCGGGC CCAAGCTCGC CGGGGCGGGC GGGTTCATCA ATATCAGCCA GAACGCCCGG
GCGGTGGTGT TCGCGGGCAC CTTCACCTCC GTTGGATTGG ACCTGGCCGT GTCGGAGGCG
GGGGTGGAGA TCCGGTCCGA GGGCCGGGTG ACCAAGTTCG TCGAGGCGGT GGAGCAGGTG
ACCTTTTCCG GCCCGCTTGC GGCGGCGGCG GGCAAGAAGG TGCTCTATGT CACCGAGCGC
GCGGTCTTTC GGCTCCGCCC CGAAGGGGTG GAACTGGTCG AGATCGCGCC GGGGATCGAC
CTGGAGCGGG ACGTACTGGC CCACATGGCT TTCGCGCCGG AAATGGCCCC GGAGATTGCC
GAGATGGACG CGCGGCTCTT TGCCGAGGGG CCGATGGGAT TGCGGGTGGA CCTGCTGCAT
CTGGACCTCG ATGACCGCGT GGCGCTGTCG GCGGACAAGG CGCAGCTGTT CCTGAATTTC
GAGAAGATGC GGGTGCGCGC GCCCGGCGAC GTGAACAAGG TCCGCGCCCG GGTCGAGGCG
GTCTGCGCGC CGCTGGGGCA CCGGGTGGAC GTGGTCGCCA ATTACGACGG GGCGCGGATC
GACGAGGAGG TCGAGGACGC CTGGGTGGCG ATGGTGCAGC AGATGGAAGA CCGCTTCTAC
GGGACGGTGA CGCGGTATTC GGGCTCCGCC TTCATGCGGA TGAAGCTCGG CGCGGCCTTC
GCCCGGGAGG TGCGCCCCCA TGTGTTCGAG ACCGCGACCG AGGCGCGCGC CTTCCTGTCG
GCGGCGCGGG GTGGATCGTT TCTGTGA
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| Protein sequence | MPNKQISAAA AAELVRDGDT VTTSGFVGIG VPEELLVALE TRFVETAHPR DLTLFFAAGQ
GDGKDRGLNR LGHEGLLARV IGGHWGLIPK VAALATAGKI AAYNLPQGVI SHLYRDIAAG
RPGTLSRVGL GTFVDPRLEG GKINDVTHDE IVSVMEVGGA EHLFYRALPV HVALLRGTSA
DPAGNISMER EALVIDNLAQ AMAAKNSGGV VIVQVERMVA RHGLNPRDVV IPGALVDAVV
VAAPENHHQT FATPYSHAFS GQFRVEADTV PEMPLTPRKV IARRAAFELP INGVVNLGIG
MPEGVAAVAG EEKLLPHLTL TAEPGVIGGQ PASGLDFGAA VNTDAIVPQS AQFDFYDGGG
LDIAVLGMAQ VDARGNVNVS RFGPKLAGAG GFINISQNAR AVVFAGTFTS VGLDLAVSEA
GVEIRSEGRV TKFVEAVEQV TFSGPLAAAA GKKVLYVTER AVFRLRPEGV ELVEIAPGID
LERDVLAHMA FAPEMAPEIA EMDARLFAEG PMGLRVDLLH LDLDDRVALS ADKAQLFLNF
EKMRVRAPGD VNKVRARVEA VCAPLGHRVD VVANYDGARI DEEVEDAWVA MVQQMEDRFY
GTVTRYSGSA FMRMKLGAAF AREVRPHVFE TATEARAFLS AARGGSFL
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