| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_0699 |
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| Symbol | dctM1 |
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| ID | 5711134 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dinoroseobacter shibae DFL 12 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009952 |
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| Strand | + |
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| Start bp | 705226 |
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| End bp | 706539 |
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| Gene Length | 1314 bp |
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| Protein Length | 437 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 641266608 |
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| Product | TRAP dicarboxylate transporter- DctM subunit |
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| Protein accession | YP_001532046 |
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| Protein GI | 159043252 |
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| COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
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| COG ID | [COG4664] TRAP-type mannitol/chloroaromatic compound transport system, large permease component |
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| TIGRFAM ID | [TIGR00786] TRAP transporter, DctM subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 0.104425 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 48 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGACTGGT TCGAGGCTTT GGCCCTGCTG CTGGGCGCGA TCGTGGCGCT CATGGCGTTG
GGCATGCCCG TGGCACTGGC CTTTCTGGCG GCCAATATCC TCGGGGCCTG GGTGTTCATG
GGCGGCGAGC GGGGGATCGT GCAGCTGTTG AACAACGGGT TGGGGGCGTT GACGACCTAT
GCCCTGGTGC CGATCCCGTT GTTCCTGCTG ATGGGGGAGA TCTTCTTTCA TACCGGGCTG
GGGGGGCGGA TGTTCACGGC CATCGACCGG CTTCTGGGCC GGCTGCCGGG GCGGTTGAGT
TATGTCACGG TGCTGGGGGG GACGGGGTTT TCGACCCTGT CGGGCTCGTC CATGGGGTCC
ACGGCGCTGC TGGGCAGCCT GATGGTGCCG GAGATGAATG CGCGGGGCTA CAAGTCGCAC
ATGAGCATCG GGCCGATCCT CGGGACCGGG GGGCTGGCGA TCATCATCCC GCCCTCGGCC
CTTGCGGTGC TGCTGGCGAC GCTGGCGCAG ATCGATGTGG GCGCGTTGCT GATCGCGGGG
GTGATCCCGG GGCTGATGCT GGCGGGGTTC TATATCGCCA CGATCTGGAT CCAGACCCGG
CGCGACCCGA GTGCGGCCCC GGCCTACGAG GTGGCGGAGG TGTCGCTGGG CGCGAAGCTC
GGGCTGCTGT TGCGGGACGT GGTGCCCATG GTGGGGGTGA TGGTGGTGAT CGTGTCGCTG
ATGATCTTCG GCATCGTCAC CCCGTCGGAG GCGGCGGCCT TTGGCGCGCT GGGTGTGATC
ATCCTCGCGG CGGCGTTCCG CTGCCTGACG GTGGAGGCGC TGCGGCGCTC GGTGGTGGGC
GCGCTGAAGG TGACGCTGAT GGCCTACATG ATCGTGTTCG GCTCGGCCAC GTTCAGCCAG
CTTCTGGCGT TCTCCGGGGC GTCCGGCGGG CTGATCGGCT GGGCCACGGG GTTCGACCTG
GACCCGATCT GGATGCTGCT GGCGATGTTC GGGGTTCTGC TGGTGCTGGG GATGTTCATG
GAGCAGATCT CGATCATGCT GCTGACGGTG CCGATCTTCT TCCCGCTGGC GCAAAGCCTC
GGGTTTGATC TGATCTGGTT CGCGCTGATC ATGCTGCTGG CGCTGGAGAT CAGCTTCACC
ACCCCGCCCT TCGGGCTGCT CCTGTTCGTG ATGAAGGGGG TGGCGCCGCC CAGCACCACC
ATGCGGGAGA TCTACCTCGC CGCGATCCCG TTCATCGCGT GCTCGCTGTT GCTGGTGGCG
CTCTTGATCC TGTTCCCGCC TCTGGCCACC TGGCTGCCGG GGCTGGGCGG CTAG
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| Protein sequence | MDWFEALALL LGAIVALMAL GMPVALAFLA ANILGAWVFM GGERGIVQLL NNGLGALTTY
ALVPIPLFLL MGEIFFHTGL GGRMFTAIDR LLGRLPGRLS YVTVLGGTGF STLSGSSMGS
TALLGSLMVP EMNARGYKSH MSIGPILGTG GLAIIIPPSA LAVLLATLAQ IDVGALLIAG
VIPGLMLAGF YIATIWIQTR RDPSAAPAYE VAEVSLGAKL GLLLRDVVPM VGVMVVIVSL
MIFGIVTPSE AAAFGALGVI ILAAAFRCLT VEALRRSVVG ALKVTLMAYM IVFGSATFSQ
LLAFSGASGG LIGWATGFDL DPIWMLLAMF GVLLVLGMFM EQISIMLLTV PIFFPLAQSL
GFDLIWFALI MLLALEISFT TPPFGLLLFV MKGVAPPSTT MREIYLAAIP FIACSLLLVA
LLILFPPLAT WLPGLGG
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