| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_0669 |
|---|
| Symbol | dacC2 |
|---|
| ID | 5711505 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dinoroseobacter shibae DFL 12 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009952 |
|---|
| Strand | - |
|---|
| Start bp | 673560 |
|---|
| End bp | 675041 |
|---|
| Gene Length | 1482 bp |
|---|
| Protein Length | 493 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 641266578 |
|---|
| Product | D-alanyl-D-alanine carboxypeptidase |
|---|
| Protein accession | YP_001532016 |
|---|
| Protein GI | 159043222 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG1686] D-alanyl-D-alanine carboxypeptidase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 24 |
|---|
| Plasmid unclonability p-value | 0.899898 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 41 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCACGTC CGTGGCTGGA AGGATTCCGA ATAATTGCAA TCGTGTGTGT GTGCCTGGGG
ATGCAAATCT CGGCACAGCC CGTACAGGCC GCGCCCTACG CGGCGATGGT GATCGATGCC
CGCACCGGCG AGGTGCTGCA TTCGCGCAAC GCCGACACAC GCCTGCACCC TGCATCCCTG
ACCAAGATGA TGACCCTCTA CATCGCCTTC GAGGCGGTGC GCATGGGCGA GATCGGCCTG
GACACGAAGG TCCGCATCTC GAAAAAGGCC GCCGCCGAGC CGCCCTCGAA ACTGGGATTG
CGACCGGGGC AGCAGATCGC CCTGCGCTAC CTGATCCGGG CCTCGGCCGT GCGGTCGGCC
AATGACGCGG CCACGGCCAT CGGAGAGGCG ATCTCCGGCT CCGAGGCGGC GTTCGCGCGG
CGCATGAACC GGACCGCCAA GGCGCTGGGG ATGAACAGCA CGACCTTCAA GAACGCCCAT
GGCCTGACCG AATCCGGCCA CTTGTCCACG GCGCGGGACA TGACGACCCT GGGACGGCAC
CTGTTCTACG ACTATCCCGA GTACTACAAC CTGTTCTCCC GCCGCTCGAC CGACACCACC
ATGGGCACCG TGGCCAACAC CAACCGGCGG CTGCTGAACG CCTATCGCGG CGCAGACGGG
ATCAAGACCG GCTATACCCG TGCCGCGGGC TTCAACCTCG TGGCCTCCGC CGAGCGCGGA
CAGGAACGGA TCATCGCCAC GGTGTTCGGC GGACGGTCCT CGGCGACCCG CAACCAGCGC
GTGGCCGAAC TGCTGGACCT CGGCTTCCAG CGGGCCCCGA GCGTGGCCAG CGTGCGCAAG
CCCGCCCCGC CCCGCTATGA CCGGGCCTTT GCCCAGGCGA CCCGCACGGA CTTGGCGCTG
GCCAAGAGCC CGCGTCCGGC GGCCCGGCCG CAGCCGGTGG CGACCCTGGT CGCGGAAACC
GTCGCCCCCC AGGTGGACAG TGCCGAAGAG CTGATCGCGA TGCTGGCGCC CTCGGTGTCC
GACGCGGTCA AGACAACGAC AGAACAGCTC GCCGCCGAGG ACGGATCGGC CGAGGTGGCC
AATGCGCCCG AGCCGGAGGC AGGCTTTGCC GAGATCCCGG TCGCCCAAGG GGCCGCAGCC
CCGGTGATGC CGCGCCCCCT GCCCGTGCCC GAGCCGCGGC GTTTTGCCGA TGTGGACCCG
GATGTGCAGC CCGAAGTGGT CACGCGGATC TCGACCTCGG GCGGGCGCCA ATGGGGCATC
CATATCGGCT CCTACACCAC CCGCTACCAG GCCGAGCGCG TTCTGCTGAA GATCGCGCTG
AAGGAGACCG GCACGCTGGA CGAGGCGCTG CGCAAGGTCG CGCGCAAGGG CGGCATGTTC
GATGCGAATT TCGTCGGGAT GAGCGCCGAG AGCGCGGAGC TGGCCTGCAA ACGCCTGACC
GCGCAGAACA TTCCCTGCGC GCCCATGAGC CCGACTTCCT GA
|
|---|
| Protein sequence | MARPWLEGFR IIAIVCVCLG MQISAQPVQA APYAAMVIDA RTGEVLHSRN ADTRLHPASL
TKMMTLYIAF EAVRMGEIGL DTKVRISKKA AAEPPSKLGL RPGQQIALRY LIRASAVRSA
NDAATAIGEA ISGSEAAFAR RMNRTAKALG MNSTTFKNAH GLTESGHLST ARDMTTLGRH
LFYDYPEYYN LFSRRSTDTT MGTVANTNRR LLNAYRGADG IKTGYTRAAG FNLVASAERG
QERIIATVFG GRSSATRNQR VAELLDLGFQ RAPSVASVRK PAPPRYDRAF AQATRTDLAL
AKSPRPAARP QPVATLVAET VAPQVDSAEE LIAMLAPSVS DAVKTTTEQL AAEDGSAEVA
NAPEPEAGFA EIPVAQGAAA PVMPRPLPVP EPRRFADVDP DVQPEVVTRI STSGGRQWGI
HIGSYTTRYQ AERVLLKIAL KETGTLDEAL RKVARKGGMF DANFVGMSAE SAELACKRLT
AQNIPCAPMS PTS
|
|---|
| |