| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_0658 |
|---|
| Symbol | oppDF |
|---|
| ID | 5711494 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dinoroseobacter shibae DFL 12 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009952 |
|---|
| Strand | + |
|---|
| Start bp | 661169 |
|---|
| End bp | 662770 |
|---|
| Gene Length | 1602 bp |
|---|
| Protein Length | 533 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 641266567 |
|---|
| Product | ABC peptide transporter |
|---|
| Protein accession | YP_001532005 |
|---|
| Protein GI | 159043211 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG4172] ABC-type uncharacterized transport system, duplicated ATPase component |
|---|
| TIGRFAM ID | [TIGR02323] phosphonate C-P lyase system protein PhnK |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 32 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 40 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGCGATG CGGTTCTGCA GGTGCGCAAC CTGCGCGTGG GATTCCGGCA GGACGGGCAG
GTGACCGAGG CCGTGAAGGG CGTGAGCTTC GACGTGGCCC AGGGCGAGAC CGTGGCCCTA
GTGGGCGAGA GCGGGTCGGG AAAGTCGGTG ACCGCGCTCA GCACCGTGTC GCTCCTGCCG
GATTCGGCGG AGGTGTCGGG ATCCATCACC TATGCCGGGA CCGAGATGGT CGGCGCGCCG
GAGCGGGACT TGCGCCGGGT GCGCGGCAAC GATGTCAGCT TCATCTTCCA GGAGCCGATG
ACCTCGCTCA ACCCGCTGCA CCCTCTGGAG AAGCAGATCA CCGAGAGCCT GACGCTCCAT
CAGGGGCTGA CCGGCGACGC GGCCCGGGCG CGGGTGATCG AGTTGCTGGA AAAGGTCGGG
ATCCGCGATG CCGAAAGCCG GTTGGGGGCG TATCCGCACC AGCTCTCCGG TGGGCAGCGC
CAGCGGGTGA TGATCGCCAT GGCGCTGGCC AACGGGCCGG ATTTGCTGAT CGCGGACGAG
CCGACCACGG CGCTCGACGT GACGATCCAG GCGCAGATCC TCGATCTGCT GGCGGATCTG
AAAGAGGCAG AGGGGATGAG CCTTCTGTTC ATCACCCATG ACCTGACCAT CGTGCGGCGG
ATCGCGGACC GGGTCTGCGT GATGCAGGGC GGCGAGATCG TCGAGACCGG CCCCACGGCG
GAGATCTTCG CCAACCCGCA GCATCCCTAT ACCCGCAAGC TACTGGCGGC GGAGCCGTCG
GGCCAGCCCG ACCCGGTGCC CGAGGACGCG CCCGTGGTGG CCGAGACCGA CAGCCTGAAG
GTGTGGTTTC CGATCCAGCG CGGCATCCTG CGGCGCACGG TCGGCCATGT GAAGGCGGTC
AACAACGCGA CGCTGAACGT GCGCGCGGGC GAGACCCTGG GCGTGGTCGG CGAGAGCGGG
TCGGGCAAGA CCACGCTGGC GCTCGCCATC CTGCGGCTGA TCTCGTCGGA GGGGCGGATC
GTCTATGCGG GCGAGAACAT CCAGGGCTGG AAATCCCGCG ACCTGCGCCG GTTGCGCAAG
GACATGCAGG TGGTGTTCCA GGACCCTTAC GGGAGCCTCA GCCCGCGCAT GACCATCGCC
CAGATCATCG CCGAGGGGCT GGGGGTGCAC GGGCTGGAGC CGGGGGCCGA CCCGCGCCGG
ATGGTGGCGG AGATCCTGGT GGAAGTGGGC CTCGACCCGG CCATGATGGA CCGCTATCCG
CACGAGTTTT CCGGCGGGCA GCGGCAGCGG ATCGCGATTG CGCGCGCCAT GATCCTGCGG
CCCAAGCTGG TGGTTCTGGA CGAGCCGACC TCGGCGCTCG ACATGACGGT GCAGGTCCAG
ATCGTGGAGC TTCTGCGCGC GTTGCAGCGG AAATACGGGC TGGCCTATAT CTTCATCTCT
CACGACCTGA AGGTGGTGCG CGCGCTGAGC CACAAGGTGA TCGTGATGCG CCAGGGTGAC
GTGGTGGAGA TGGGCGAGGG CCGGCAGATC TTCGAGCGGC CCCGGTCGGA CTATACCAAG
CAGTTGCTGG CGGCGGCGTT CATGGATCGT GGTGCGGCCT GA
|
|---|
| Protein sequence | MSDAVLQVRN LRVGFRQDGQ VTEAVKGVSF DVAQGETVAL VGESGSGKSV TALSTVSLLP
DSAEVSGSIT YAGTEMVGAP ERDLRRVRGN DVSFIFQEPM TSLNPLHPLE KQITESLTLH
QGLTGDAARA RVIELLEKVG IRDAESRLGA YPHQLSGGQR QRVMIAMALA NGPDLLIADE
PTTALDVTIQ AQILDLLADL KEAEGMSLLF ITHDLTIVRR IADRVCVMQG GEIVETGPTA
EIFANPQHPY TRKLLAAEPS GQPDPVPEDA PVVAETDSLK VWFPIQRGIL RRTVGHVKAV
NNATLNVRAG ETLGVVGESG SGKTTLALAI LRLISSEGRI VYAGENIQGW KSRDLRRLRK
DMQVVFQDPY GSLSPRMTIA QIIAEGLGVH GLEPGADPRR MVAEILVEVG LDPAMMDRYP
HEFSGGQRQR IAIARAMILR PKLVVLDEPT SALDMTVQVQ IVELLRALQR KYGLAYIFIS
HDLKVVRALS HKVIVMRQGD VVEMGEGRQI FERPRSDYTK QLLAAAFMDR GAA
|
|---|
| |