| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_0655 |
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| Symbol | oppA |
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| ID | 5711491 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dinoroseobacter shibae DFL 12 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009952 |
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| Strand | + |
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| Start bp | 656989 |
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| End bp | 658890 |
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| Gene Length | 1902 bp |
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| Protein Length | 633 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 641266564 |
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| Product | ABC peptide transporter |
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| Protein accession | YP_001532002 |
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| Protein GI | 159043208 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG4166] ABC-type oligopeptide transport system, periplasmic component |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 24 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 47 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCGAAAGC CACAGGTGCG AGCAGCCGAC AGACCCTGGA TCACCCGCCG ATACGGCCCG
ACCCTGAGCG GTCTGGCGCT CGGCATGGCG CTTGCGCTGG CGGCGCTGCC CGCGCGGGCG
GAAATGATCA CCTCCCACGG CATCTCGACC TTCGGCGATC TGAAATACCC TGCCGATTTT
CCGCATCTGG ACTATGTGAC CCCGGACGCA CCCAAGGGCG GCGAGATGTC GGTCTGGGCC
TTCGGATCGT TCGACTCGAT GAACCCCTAC ACGCTCAAGG GCCGCGCGGC GGGCCTGTCC
AACGTGTTCT TCGAAAGCCT GCTCACCGGC ACCGCGGACG AGATCGGCGC GGCCTATTGC
CTGCTGTGTG AGAGCCTGAC CTATCCCGAG GACCGCTCGG AAGTGACCTT CACCTTGCGC
GAGGGCATCA CGTTTTCCGA CGGCACGCCC CTGACCGCGC AAGACGTGGT GTTTTCCTAC
GAGATCCTGC TGACCAAGGG CCTGCCGTCC TTCCGGGCGC AGCTGGCCCA GAAGGTCGAG
AGCGCCGAGG CCTTGGACGA CCGTACGGTC CGCTTCGTGT TCAAGGAGGG CATTCCCACC
CGCGATCTGA TCTCGGACGT GGGCGCGCTG CCGGTGTTTT CCGAGGATTT CTACACCGCG
AACGACCGGG ACTTCGAAGA GACCTCGCTG GAGCCGCTGG TCGGATCGGG GCCCTACGTT
CTGGGCCGGA TGGATGTGGG CCAGACGGTG GTTTACGAGC GCAATCCGGC GTACTGGGGC
GCGGACCTGC CGATCAATAT CGGCCGCAAC AATTTCGACG CCATCCGGAT CGAGTATTAC
GCCGACTACA ACGCGGCCTT CGAGGGGTTC AAGGGCGGCA CCTATACCTT CCGCAACGAG
GCGTCTTCGA AGATCTGGGC CACTGGGTAC GATTTTCCGG CGGTGGCCGA AGGGTCGGTC
ATTAAGGCCG AATTGCCCAA CGGATCCAAG GCCACGGGTC AGGCTTGGGT GTTCAACCTG
CGCCGCCCGC AATTCCAGGA TCCGCGCGTG CGCGAAGCCT TGGGCATGAT GTTCAATTTC
GAGTGGTCGA ACGAGACGCT TTTCTACGGC ATCTACGACT ATGTCGACAG TTTCTGGGAC
AATTCCGAGC TGGAGGCGAC GGGCCTGCCG ACCGAGGCCG AGATCGCGAT CCTGCAACCG
CTGGTGGACG AGGGGCTGCT CGCGCCGGAG ATCCTGACCT CCGAGCCGTT CAGCTTCCCG
CGCTCCGGCG CGCGGCAGCT CGATCGCGGC AACCTGCGGG CGGCGTCGGC GCTGCTGGAC
GAGGCGGGCT GGGTCGTCGG CGATGACGGG TTGCGGCGCA AGAACGGACA GACCCTGAGC
GTCGAATTCC TCAACGACAG CCAGACCTTC GACCGGGTGA TCAATCCTTA CGTCGAGAAC
CTCAAGCGGT TGGGCGTCGA TGCCCGCCAC ACGCGGATCG ACAATGCGCA GATGACCCTG
CGGGAGCGGC CGCCGGAGTA TGATTTCGAC ATGGTCACGA CCTTCATGGC GACCGATTAC
ATCCCCGGCA GCGGGCTGAG GCAGTATTTC GGCTCCGAGA CCGCCGATAC CTCCACCTTC
AACAAGATGG GCCTGCAATC GGAGGCGATC GACCGGCTGA TCGAGGTTGT GCTCGCCGCG
CAAAGCCAGG AAGAGTTGAC CACGGCGGTC CATGCGCTCG ACCGTGCGCT GCGGGCCGAG
AAGTTCTGGG TGCCGCAATG GAACAAGAAC ACCCATACGG TGGCCTATTA CGACATGTAC
GAGCATCCCG AGACCCTGCC GCCCTTTGCC CTGGGCAACC TGGATTTCTG GTGGTTCAAC
GCCGAGAAGG CCGAGGCCCT GCGCGCGAAG GGCGCGTTGT AA
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| Protein sequence | MRKPQVRAAD RPWITRRYGP TLSGLALGMA LALAALPARA EMITSHGIST FGDLKYPADF
PHLDYVTPDA PKGGEMSVWA FGSFDSMNPY TLKGRAAGLS NVFFESLLTG TADEIGAAYC
LLCESLTYPE DRSEVTFTLR EGITFSDGTP LTAQDVVFSY EILLTKGLPS FRAQLAQKVE
SAEALDDRTV RFVFKEGIPT RDLISDVGAL PVFSEDFYTA NDRDFEETSL EPLVGSGPYV
LGRMDVGQTV VYERNPAYWG ADLPINIGRN NFDAIRIEYY ADYNAAFEGF KGGTYTFRNE
ASSKIWATGY DFPAVAEGSV IKAELPNGSK ATGQAWVFNL RRPQFQDPRV REALGMMFNF
EWSNETLFYG IYDYVDSFWD NSELEATGLP TEAEIAILQP LVDEGLLAPE ILTSEPFSFP
RSGARQLDRG NLRAASALLD EAGWVVGDDG LRRKNGQTLS VEFLNDSQTF DRVINPYVEN
LKRLGVDARH TRIDNAQMTL RERPPEYDFD MVTTFMATDY IPGSGLRQYF GSETADTSTF
NKMGLQSEAI DRLIEVVLAA QSQEELTTAV HALDRALRAE KFWVPQWNKN THTVAYYDMY
EHPETLPPFA LGNLDFWWFN AEKAEALRAK GAL
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