| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_0647 |
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| Symbol | |
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| ID | 5711482 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dinoroseobacter shibae DFL 12 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009952 |
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| Strand | + |
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| Start bp | 647766 |
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| End bp | 650513 |
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| Gene Length | 2748 bp |
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| Protein Length | 915 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 641266555 |
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| Product | hypothetical protein |
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| Protein accession | YP_001531994 |
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| Protein GI | 159043200 |
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| COG category | |
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| COG ID | |
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| TIGRFAM ID | [TIGR03296] M6 family metalloprotease domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 0.449731 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 47 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCCCAGAT TTCGGCTCGG TAACCGTCTC GTTTTTCGCG CCCCTTTTCC AACCCTGCAC
CATGACCCGC GCGACCCGCC CGTGCTCACC CGCCGCCCGG CGGTGCCGTC CCTTGACCCC
GACAAGATCG CGCAGCTGCG CAAGGTGGAC CGGCCCTATG ACCGGCATCT GACGCCGTGT
TTCCACCCGC CTGCGGGGGA GCTGCCGGAC CTGCGCCGCC CGCCGCGCGG GGCGTTCGAG
TTTCCGCTGA TGCCGCGCCC GATCCCGAGC CCGGCACCGC GCCCGGGCGC CGACCTGCCG
AGCTATGCGC CCCAGTGGAA TTCCGTGGCG CTGTTCTTCA ACCTCGACAT GCCCGCCGCC
GACCGGCCCG ACGACTATGC CGCCACCACG GTGGCCACGG CCAGGACCTT CCTCGACGAG
GGGCCCGGGG CGCTGTCGCC GGGCATCTCC GAGAGCCTGA CCCAGTATTG GGGCGCCCTG
TCGAACGGGG CCTTCGCCTT CGGGCTGAAC ACACCGCGGG ACGGTGCGGG CAAGCCGCTG
ATCCCCGACA TCGCGCCGCC CGGCGGGGAT GTGCAGGCCT GGGAGGAACT GATCAGGCGC
TGCGTCAAGG CCAATGCCCA GGCCATCTGG CAGGCCGCGG GCGGTCTGAT GAAGAACGGC
AAGCGCTGGA TCCCGTCGCT GGTGCTGGTG CAGAACTACT GGACCCATGC CAGCGCGCGG
TTCGGCGGCT ACGATATCGA CGTCTCGGGC ACGACCTATA CCGTGGGCGA CGTGACCCAT
ATCCGCTTCG GGCTCGACAC CTACGCGCCG CCGGAGGCAC CGGGAAAGGT CGGCCGAACC
TGGTGGGGCA CGCTGAACCA TGAATACGCC CACAATTTCC TGGAATTCTG GGACCTCTAC
GGCCCCTCGG GCTGCACCGG GTATTGGGAC TTGCTGGGCG ACAACTCCCC CCCGGGGCGG
ATGTCCGAGG TTTCCTCGCT CTTCAAGGAG CGCATGGGCT GGCTGTCCTT CAAGCAGGTG
ATCGAGGGGC CGAACGTGTC GCGGCGCACC CTGTCCCTGC GGCCCTATAC GACCGATCAC
GAGGCGATCA AGGTCGTCCC GGATCCGGAG TTCACGCCCC ATGAATATTT CCTGCTGGAG
TACCGCAAAT CCACCGGAGC GGAGGTCTGG CGCCCCGATG GGGGCTTGCC GGAAGAGGGG
CTGCTCATCA CCCATGTCAA CGACCGGATC GGCGTGCCCA GTACGTGGCT GTTGCGCGAT
GCGCCCTTCT TCAACACCGA GTTCGCCGAT GCGGGCGGGC CCAACGTGGT GGACTGGCAT
GGCCACAAGG AGCTGACCGG CAAGCTTTTC CCGCAAGGCG CGCAGAACAG CTTCACGCCG
GCGACCGCGC CGTCGAGCAA CCTTTACGGG CCGCGCAATT CCGGGCTGTC GATCACCGGC
ATCCGGATCG AGGCGGAGCA GCTGCGCTTC GAGTTGGAGA TCAACGCGCA TCACAGCATC
GGCTGGACCG TCAGCTCCGA GGACCGCGCG CTGGCGGGCC GGTTCACGCC CGCCTCGGCG
ACCTCCGGCG AGGAGATCTT CATCCGCAAC GGCAATGCCG CCGCACTTCT GAGCCATGGC
GAGGGCCAGT GGAATGTCGA GAAGCGGCAG GATGGCTGGA TCGGCGGCTG GAACCTCGGG
ACCGACAACC GCCAGACGGT CGGCGATCTG GACGGGGACG GCCGGGACGA GATCTTGATC
CGCTCGCCCG AGTGGATCGG CGTGCTGAAA TGGACCCGCA GCCGGTTCGA GAGTGTCACC
GTCCAGCATG ACTGGGTGGA TGGCTGGAAT CTCGGCGCGG ACAATCGGGA GCTTCTGGCC
GATCTCGACG GGGATGGCGC GGCGGAGGTC TATATCCGCT CGCCCGAATG GGCCGGGGTG
ATGAAGCTGG AAGGCGGGCG GCTGCGGCTG AAGAAGATCC ATCACGACTG GATCGACGAC
TGGAATCTCG GGCGCGATGA CCGGGAGTAT GTCGGGCGGT TCTCCACCGA GGAGCGGGAC
GAGATCGTGA TCCGCAGCGA CAACTGGATC GGCCTGCTGC GCTGGGATGC GCGGGCGCAG
AAACTCGTGC GTGCCGGGAT CCAGCATGAC TGGGTCGATG GCTGGAACCT CGGGCCCGGC
GACTGGCACG CCATCGCGGA TGTGGATGGT GACGGGATGG ACGAGATCGT GATCCGCAGC
GATGGCTGGA TCGGGGTGCT GAAATGGCAG GGCGGGCGGT TCCGCGTGCT GTGGATGACG
AAAGAGCATG TGAACCACCA CGAGGACCGG GCGGATCGCC GGATGCCGCT GGACCCCGAG
GACCGGATGT ATGCGGGCCG GTTCCGGACG GACCGGGACG GGGTGCTGAT CCGCAAGGAC
CAGAACGGGG CGGGCCATTA CGGCAAGACA GGCCTCTACG TGCTGGCCTG GCAGGACGGT
GAGATGAAGG TGGTCCATGC GATCCACAGC CATTTCAACG GGCGCTGGAA CCTCGGGGCG
GGGGACCGTT TCGTGCTGGG GGATTTCCAC CGCACGGGGC GGGATATCGC GCTGGGCGAC
CGGGACACGG TGATCGACGG GCTGACGGAT GTGTTCATCC ATAACGGCTG GGGCACCGGC
ATGGTCGGGG TGAATCACGG GCGGCTCTAT CCCGAGGGCA ATCCGAACAA GACCGTCTCG
CAGATCGGCC TGACCTGGGC GCAGCGCGGG CATCTGGTCA ACCTGTGA
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| Protein sequence | MPRFRLGNRL VFRAPFPTLH HDPRDPPVLT RRPAVPSLDP DKIAQLRKVD RPYDRHLTPC
FHPPAGELPD LRRPPRGAFE FPLMPRPIPS PAPRPGADLP SYAPQWNSVA LFFNLDMPAA
DRPDDYAATT VATARTFLDE GPGALSPGIS ESLTQYWGAL SNGAFAFGLN TPRDGAGKPL
IPDIAPPGGD VQAWEELIRR CVKANAQAIW QAAGGLMKNG KRWIPSLVLV QNYWTHASAR
FGGYDIDVSG TTYTVGDVTH IRFGLDTYAP PEAPGKVGRT WWGTLNHEYA HNFLEFWDLY
GPSGCTGYWD LLGDNSPPGR MSEVSSLFKE RMGWLSFKQV IEGPNVSRRT LSLRPYTTDH
EAIKVVPDPE FTPHEYFLLE YRKSTGAEVW RPDGGLPEEG LLITHVNDRI GVPSTWLLRD
APFFNTEFAD AGGPNVVDWH GHKELTGKLF PQGAQNSFTP ATAPSSNLYG PRNSGLSITG
IRIEAEQLRF ELEINAHHSI GWTVSSEDRA LAGRFTPASA TSGEEIFIRN GNAAALLSHG
EGQWNVEKRQ DGWIGGWNLG TDNRQTVGDL DGDGRDEILI RSPEWIGVLK WTRSRFESVT
VQHDWVDGWN LGADNRELLA DLDGDGAAEV YIRSPEWAGV MKLEGGRLRL KKIHHDWIDD
WNLGRDDREY VGRFSTEERD EIVIRSDNWI GLLRWDARAQ KLVRAGIQHD WVDGWNLGPG
DWHAIADVDG DGMDEIVIRS DGWIGVLKWQ GGRFRVLWMT KEHVNHHEDR ADRRMPLDPE
DRMYAGRFRT DRDGVLIRKD QNGAGHYGKT GLYVLAWQDG EMKVVHAIHS HFNGRWNLGA
GDRFVLGDFH RTGRDIALGD RDTVIDGLTD VFIHNGWGTG MVGVNHGRLY PEGNPNKTVS
QIGLTWAQRG HLVNL
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