Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Dshi_0617 |
Symbol | clpB |
ID | 5712071 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Dinoroseobacter shibae DFL 12 |
Kingdom | Bacteria |
Replicon accession | NC_009952 |
Strand | + |
Start bp | 609070 |
End bp | 611685 |
Gene Length | 2616 bp |
Protein Length | 871 aa |
Translation table | 11 |
GC content | 67% |
IMG OID | 641266520 |
Product | chaperone protein clpB |
Protein accession | YP_001531964 |
Protein GI | 159043170 |
COG category | [O] Posttranslational modification, protein turnover, chaperones |
COG ID | [COG0542] ATPases with chaperone activity, ATP-binding subunit |
TIGRFAM ID | [TIGR03346] ATP-dependent chaperone ClpB |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 18 |
Plasmid unclonability p-value | 0.995797 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 35 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGAACATGG AAAAGTTCAC GGAACGGTCG CGCGGGTTCC TTCAGGCTGC GCAGACAATC GCGATGCGGG AAAACCACCA GCGCATGGTG CCCGAGCATC TGTTGAAGGC CCTTCTGGAT GACGAGGAAG GCTTGGCCGC CAACCTGATC GCCCGTGCGG GCGGCGACGC GGCCCGCGTG CGCGAGGCGC TTGCCGCGGC CCTCGACAAG CTGCCCAAGG TGTCCGGCGA CGGCGCCCAG ACCTATCTCG ATCAACAGAC CGCGAAGGTT CTGGACGAGG CCGAAAAGCT CGCGACCAAG GCCGGGGACA GTTTCGTGCC CGTCGAACGC ATCCTGACCG CGCTTGCCGT GACCAAGTCC GGTGCCAAGA CCGCCCTGGA AGCGGGCGGC GTCTCGGCGC AGGCGCTGAA TGGCGCGATC AACGATATCC GCAAGGGGCG CACGGCCGAC ACCGCGTCGG CGGAATCGGG GTATGACGCG CTCAAGAAAT TCGCGCGCGA CCTGACCGAG GCCGCCGCGG ACGGCAAGAT CGATCCGATC ATCGGGCGCG ACGAGGAAAT TCGGCGCGCG ATGCAGGTCC TCAGCCGCCG GACCAAGAAC AACCCTGTCC TGATCGGCGA GCCGGGCGTC GGCAAGACCG CCATCGCCGA GGGCCTCGCC CTGCGGATCA TCAATGGCGA TGTGCCGGAG TCCCTGCGCA ACAAGAAGCT GATGGCGCTG GACATGGGCT CGCTCATCGC GGGCGCGAAA TACCGTGGCG AGTTCGAGGA GCGGTTGAAA TCCGTCCTGT CCGAAGTGAC GGCGGCGGCG GGCGAGATCA TCCTGTTCAT CGACGAGATG CACACGCTCG TGGGCGCGGG CAAGGCGGAT GGGGCGATGG ACGCCTCCAA CCTGCTGAAA CCGGCGCTGG CGCGGGGCGA GTTGCACTGC GTGGGGGCGA CGACGCTCGA CGAGTATCGC AAATACGTGG AAAAGGACGC GGCGCTTGCC CGCCGGTTCC AGCCGGTCAT GGTGCAGGAG CCCACGGTCG AGGATACCGT GTCGATCCTG CGCGGCATCA AGGAGAAATA CGAGTTGCAC CACGGTGTGC GGATCTCGGA CTCGGCCCTG GTGGCGGCGG CGACGCTGAG CCATCGTTAT ATCACCGACC GGTTCCTGCC GGACAAGGCG ATCGACCTCG TGGACGAGGC CGCGAGCCGG TTGCGCATGG AGGTGGACAG CAAGCCCGAG GAGCTCGACG CGCTCGACCG CGAGATCCTG CAAAAGCAGA TCGAGGCGGA GGCCTTGCGC CTGGAGGATG ACGCGGCCTC GCGCGAGCGG CTGGCCAGCC TTGAAAAGGA CCTGTCGGAC CTGCAGCAGC GCAGCGCCGA GATGACCGCC CAGTGGCAGT CCGAGCGCGA CAAGTTGGCC TCGGCTCGCG ACCTGAAGGA ACATCTCGAC AAGGCGCGCG CCGAGTTGGA GATCGCCAAG CGGGAGGGCA ACCTCGCCCG CGCGGGGGAG TTGTCCTATG GCGTCATTCC GGGGCTGGAG AAGCAGCTGG CCGAAGCCGA GAGCGGCGAG GGCGACGTGA TGGTCGAAGA GGCCGTGCGT CCCGAGCAGA TCGCGAGCGT TGTCGAACGC TGGACCGGTA TTCCGACCTC CAAGATGCTG GAGGGGGAGC GCGAGAAGCT CTTGCGCATG GAAGAGGAGA TCGGGCGCCG GGTGATCGGG CAGAAGACCG CCGTGAATGC CGTGGCCAAT GCGGTGCGCC GGGCGCGCGC GGGGCTGAAC GACGAGAACC GGCCCTTGGG CTCGTTCCTC TTTCTCGGGC CGACCGGGGT CGGCAAGACC GAGCTGACCA AGGCCGTCGC CGAGTTCCTG TTCGACGACG ACAGCGCCAT GGTGCGGATC GACATGTCCG AATTCATGGA GAAACACGCG GTCGCGCGTC TGATCGGGGC CCCTCCGGGG TATGTCGGGT ATGACGAGGG CGGGGTGCTG ACCGAAGCGG TGCGGCGCCG GCCCTACCAG GTCGTGCTGT TCGATGAGGT CGAGAAGGCC CACCCGGACG TGTTCAACGT GCTCCTGCAG GTGCTCGACG ACGGTGTGCT GACCGACGGG CAGGGGCGCA CGGTGGACTT CAAGCAGACG CTGATCGTGC TGACCTCGAA CCTCGGGGCG CAGGCGCTCA GCCAATTGCC CGATGGCGCG GACGCCAGTG CGGCCAAGCG GGACGTGATG GACGCGGTGC GCGCCCATTT CCGGCCCGAG TTCCTGAACC GGCTGGACGA GACGATCATC TTCGACCGCC TGGTGCGGGA CGACATGGAC GCGATTGTGG ATATCCAGCT CGCCCGGCTG CAGAAGCGCC TGGATGCGCG CAAGCTGACC CTGGCGCTGG ACGATGCGGC GCGCAGCTGG CTTGCGGATG AAGGCTATGA CCCTGTGTTC GGGGCCCGGC CCCTCAAGCG CGTGATCCAG CGGGCGCTGC AGGACCAGTT GGCCGAGATG ATCCTGGCCG GGGACGTGAC CGACGGCGAG ACCATTCCGG TCAGCGCCGG GCCGGACGGG CTGCTGGTCG GCGACAGGGT GTCGACCTCC CGCAGGGTTC CGCCGCAGGA CGCCGTCGTC CACTGA
|
Protein sequence | MNMEKFTERS RGFLQAAQTI AMRENHQRMV PEHLLKALLD DEEGLAANLI ARAGGDAARV REALAAALDK LPKVSGDGAQ TYLDQQTAKV LDEAEKLATK AGDSFVPVER ILTALAVTKS GAKTALEAGG VSAQALNGAI NDIRKGRTAD TASAESGYDA LKKFARDLTE AAADGKIDPI IGRDEEIRRA MQVLSRRTKN NPVLIGEPGV GKTAIAEGLA LRIINGDVPE SLRNKKLMAL DMGSLIAGAK YRGEFEERLK SVLSEVTAAA GEIILFIDEM HTLVGAGKAD GAMDASNLLK PALARGELHC VGATTLDEYR KYVEKDAALA RRFQPVMVQE PTVEDTVSIL RGIKEKYELH HGVRISDSAL VAAATLSHRY ITDRFLPDKA IDLVDEAASR LRMEVDSKPE ELDALDREIL QKQIEAEALR LEDDAASRER LASLEKDLSD LQQRSAEMTA QWQSERDKLA SARDLKEHLD KARAELEIAK REGNLARAGE LSYGVIPGLE KQLAEAESGE GDVMVEEAVR PEQIASVVER WTGIPTSKML EGEREKLLRM EEEIGRRVIG QKTAVNAVAN AVRRARAGLN DENRPLGSFL FLGPTGVGKT ELTKAVAEFL FDDDSAMVRI DMSEFMEKHA VARLIGAPPG YVGYDEGGVL TEAVRRRPYQ VVLFDEVEKA HPDVFNVLLQ VLDDGVLTDG QGRTVDFKQT LIVLTSNLGA QALSQLPDGA DASAAKRDVM DAVRAHFRPE FLNRLDETII FDRLVRDDMD AIVDIQLARL QKRLDARKLT LALDDAARSW LADEGYDPVF GARPLKRVIQ RALQDQLAEM ILAGDVTDGE TIPVSAGPDG LLVGDRVSTS RRVPPQDAVV H
|
| |