| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_0605 |
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| Symbol | dctM5 |
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| ID | 5712059 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dinoroseobacter shibae DFL 12 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009952 |
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| Strand | - |
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| Start bp | 597820 |
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| End bp | 599106 |
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| Gene Length | 1287 bp |
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| Protein Length | 428 aa |
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| Translation table | 11 |
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| GC content | 58% |
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| IMG OID | 641266508 |
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| Product | TRAP dicarboxylate transporter |
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| Protein accession | YP_001531952 |
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| Protein GI | 159043158 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG1593] TRAP-type C4-dicarboxylate transport system, large permease component |
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| TIGRFAM ID | [TIGR00786] TRAP transporter, DctM subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 33 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 38 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCAAACAC TTATCTTGAT CATTCTCGTT GGCCTCGTCG TTGCCGCCGT TCCGATTGCC
GCCGTTCTTG GCATCCTCGG TCTTGCGCTG GATGAGGTCT TTACGAACGG GCGCCGCGCC
CTGATGATGG GCGATTTCAT CTGGGAGCAG AGCATCGAAT ACATTCTGGT CGCGGTTCCG
ATGTTCATCC TGCTGGGGGA AATTATCCTG CGTGCCGGGA TAGCCACGCG GATGTACACT
GCGGTCGCCA AATGGCTTAG CTGGCTTCCT GGCGGGCTGA TGCACGCCAA TGTTGGTTCG
TGCGCGGTGT TCGCCGCAAC ATCCGGTTCC AGTGTGGCCA CCGTGGCCAC AGTTGGCACG
GTCGCCTATC CCGAAATCGA GAAGCGGCAA TACAATGAGC CGCTGTTTCT GGGAACCCTT
GCCGCCGGGG GCACCCTCGG CATCCTGATC CCGCCTTCGA TCGCGCTGAT CCTTTATGGT
CTCCTGACCG ATACCTCCGT ACCGGAACTG TACCTCGCTG GCGTCATCCC AGGAGCGATG
CTGGCCTTGT TTTTCATGCT GGTTGTTATC TTTGCCTGTT TTATGCGGCC CGGGTGGGGG
GGATCACCGG TCGAGACGAG TTGGCGCGAC AGGCTTGAGG CGTTGCCAGA TCTCCTGCCG
CCTCTTGTTT TGTTTGCCGT GGTGGTAGGG TCGATCTATA CCGGTCTCGC AACGCCGACC
GAGGCGGCCT CCATTGGCGT CGTCTGCGCC ATCGGTATTG CGGCCTGGTT CAGGGCGCTC
AGTGTGCGCA TGCTGATCGA AGCGTTCGAG AGCACAATGT GCTCGACTGC AATGGTGATG
ATAATCATCC TCGCGGCAGT CTTCCTGAAC TTCGTTCTCG GATTCATGGG CGTTACGCAA
GCGATCATCG ACGGGATCGA CGCGCTTGGT TGGACGCCGA TGCAGACGAT GATGGTCATC
ATCGTGTTCT ACCTCCTTCT GGGCATGTTC ATGGAAACGC TGTCCATGAT GCTCACGACG
ATCCCGGTGG TCTTTCCCAT CGTGGCGCAT ATGGGATTTG ACCCAGTCTG GTTTGGGATC
ATGATCACCG TTTTGATGGA GGCTGCGCTG ATTACGCCAC CTATCGGGCT CAATCTCTAC
GTGGTCCACG GCACACGAAC TCGTGGCGGC AAGTTCAACG ACGTGAGCTA CGGCGCGCTG
CCCTTCCTAA TTGCCATGCT CGCATTGATC GGCTTCTTAC TGACCTTCCC CGATTTGGCC
ACCTGGCTGC CGAACCAAGT CTACTAA
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| Protein sequence | MQTLILIILV GLVVAAVPIA AVLGILGLAL DEVFTNGRRA LMMGDFIWEQ SIEYILVAVP
MFILLGEIIL RAGIATRMYT AVAKWLSWLP GGLMHANVGS CAVFAATSGS SVATVATVGT
VAYPEIEKRQ YNEPLFLGTL AAGGTLGILI PPSIALILYG LLTDTSVPEL YLAGVIPGAM
LALFFMLVVI FACFMRPGWG GSPVETSWRD RLEALPDLLP PLVLFAVVVG SIYTGLATPT
EAASIGVVCA IGIAAWFRAL SVRMLIEAFE STMCSTAMVM IIILAAVFLN FVLGFMGVTQ
AIIDGIDALG WTPMQTMMVI IVFYLLLGMF METLSMMLTT IPVVFPIVAH MGFDPVWFGI
MITVLMEAAL ITPPIGLNLY VVHGTRTRGG KFNDVSYGAL PFLIAMLALI GFLLTFPDLA
TWLPNQVY
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