| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_0583 |
|---|
| Symbol | kdsA |
|---|
| ID | 5712037 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dinoroseobacter shibae DFL 12 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009952 |
|---|
| Strand | - |
|---|
| Start bp | 574071 |
|---|
| End bp | 574904 |
|---|
| Gene Length | 834 bp |
|---|
| Protein Length | 277 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 641266486 |
|---|
| Product | 2-dehydro-3-deoxyphosphooctonate aldolase |
|---|
| Protein accession | YP_001531930 |
|---|
| Protein GI | 159043136 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG2877] 3-deoxy-D-manno-octulosonic acid (KDO) 8-phosphate synthase |
|---|
| TIGRFAM ID | [TIGR01362] 3-deoxy-8-phosphooctulonate synthase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 36 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 42 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAAACAC TCCAGATCGG CGAATTGCGC GTCGGCAACG ATCAACCGCT GACGCTGATC
GCGGGCCCGT GCCAGCTCGA GAGTTTCGAA CAGGGGCTTG AGATTGGCGC TGCGCTGAAG
GAGGCATGCG ATCGCTCCGG CGCGCAGTTC ATTTTCAAGG CCTCTTACGA CAAGGCGAAC
CGGACATCCG CCGGGGGCGT GCGGGGCATG GGCATGGCCG CGGGGCTCGA TGCCCTCGGG
CGGCTGCGGG AAACGCTCGG GGTGCCCGTG CTGACCGATG TCCATGCCGC AGAGCATTGC
GCGCCCGCGG CGGAGGCTGT CGATATCCTC CAGATCCCGG CCTTTCTGTG CCGCCAGACT
GACCTTTTGA TCGCAGCCGG CGAAACCGGG GCCGTGGTAA ACGTCAAGAA GGGGCAATTC
CTCGCACCCT GGGACATGCC CCATGTGATC GGAAAAATCG AAAGCACCGG GAACACCCGT
ATCATGCTGA CGGAACGCGG GGCCTCTTTC GGCTACAATA CCCTCGTCGC CGACATGCGC
AGCCTGCCCA CCATGATGAA GACAGGATAC CCGGTCGTCA TGGACGCCAC CCACTCGGTC
CAGCAGCCCG GCGGCCTCGG TGGCGCCTCG GGCGGACAAC GGGAGTTCGC ACCGGTCATG
GCCCGGGCTG CGGTCTCGCT TGGTATCGCC GCGGTGTTTA TCGAAACCCA CCCCGCGCCG
GACACAGCCC CGTCCGATGG ACCGAACATG ATTCCCCTCG CCCAGATGCA GGACCTCATC
GGCGACCTGA TGGCGTTCGA TGCCTTGGCG AAGACCAACC CGATCCGGTT GTAG
|
|---|
| Protein sequence | MKTLQIGELR VGNDQPLTLI AGPCQLESFE QGLEIGAALK EACDRSGAQF IFKASYDKAN
RTSAGGVRGM GMAAGLDALG RLRETLGVPV LTDVHAAEHC APAAEAVDIL QIPAFLCRQT
DLLIAAGETG AVVNVKKGQF LAPWDMPHVI GKIESTGNTR IMLTERGASF GYNTLVADMR
SLPTMMKTGY PVVMDATHSV QQPGGLGGAS GGQREFAPVM ARAAVSLGIA AVFIETHPAP
DTAPSDGPNM IPLAQMQDLI GDLMAFDALA KTNPIRL
|
|---|
| |