| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_0551 |
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| Symbol | xylD |
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| ID | 5712004 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dinoroseobacter shibae DFL 12 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009952 |
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| Strand | + |
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| Start bp | 538237 |
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| End bp | 539280 |
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| Gene Length | 1044 bp |
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| Protein Length | 347 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 641266453 |
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| Product | D-xylulose reductase |
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| Protein accession | YP_001531898 |
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| Protein GI | 159043104 |
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| COG category | [E] Amino acid transport and metabolism
[R] General function prediction only |
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| COG ID | [COG1063] Threonine dehydrogenase and related Zn-dependent dehydrogenases |
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| TIGRFAM ID | [TIGR01202] 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase |
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Plasmid Coverage information |
| Num covering plasmid clones | 34 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 51 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCCAGAG CACTCGTATT AGAAGCAGCG CGCAAGCTGG CGCTGCGCGA CATCGATCTT
CCCGACGAGC TTGGTCCAGA GGATGTCCGC ATCGCGATTG ATACTGTCGG GGTCTGCGGC
AGCGACGTGC ACTATTACAC GCATGGCAAG ATCGGCCCCT TCGTTGTGAA GCAACCAATG
GTTCTTGGTC ATGAGGCGGC GGGCATTGTC ACGGAAATTG GCGCGGCGGT CACGCATCTG
GCGTTGGGCG ACCGGGTGTG TATGGAACCC GGCATCCCCA ATGGCAGTTC CAAGGCCTCC
AAGCTTGGCG TCTACAACGT GGACCCCGCG GTACAGTTCT GGGCAACGCC GCCTGTGCAC
GGTTGCCTGA CGCCCTCGGT GGTGCATCCC GCGGCCTTCA CATTCAAACT GCCGGATCAC
GTGAGCTTTG CCGAAGGAGC GATGGTCGAG CCTTTCGCCA TTGGGATGCA GGCCGCTGCA
AAGGCCCGGA TCAAGCCCGG GGATGTGGCC TTGGTCACCG GTGCAGGGCC CATCGGCGTG
ATGGTCGCAC TTGCCGCTCT GGCCGGTGGT TGTGCGAAGG TGTTCGTATC CGATCTTGTG
GAAGACAAGC TGGCGATTGC TGCGGGCTAT GACAATATCC ACCCGATCCT GATCCCTCGC
GACAACCCGG CGGAGGTTCT GCAAGAGGCG ACAGAGGGTT GGGGGGCCGA TGTCGTCTTT
GAATGCGCGG GTGCGGCCGC GTCTATCCAG GCAGCGTTGG AAGCCGCAGC GCCCGCCGGC
TGCGTTGTCT GGGTCGGGAT GCCGGTCGAT CCGGTGCCGG TGGACATCGT TCTGGCCCAG
TCTAGGGAAC TGCGAATGGA AACGGTGTTC CGCTATGCGA ACATGTATGA CCGCGCCATC
GCCCTGTTGG CATCGGGCAA GGTCGATCTG AAGCCCTTGA TCTCTGCAAC CTTTCCCTTC
GAAGACAGTA TCGCGGCTTT TGACCGAGCG GTGGAAGCAC GACCAACCGA TGTCAAGATC
CAGATCAAGA TGGGGGCGTC ATGA
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| Protein sequence | MARALVLEAA RKLALRDIDL PDELGPEDVR IAIDTVGVCG SDVHYYTHGK IGPFVVKQPM
VLGHEAAGIV TEIGAAVTHL ALGDRVCMEP GIPNGSSKAS KLGVYNVDPA VQFWATPPVH
GCLTPSVVHP AAFTFKLPDH VSFAEGAMVE PFAIGMQAAA KARIKPGDVA LVTGAGPIGV
MVALAALAGG CAKVFVSDLV EDKLAIAAGY DNIHPILIPR DNPAEVLQEA TEGWGADVVF
ECAGAAASIQ AALEAAAPAG CVVWVGMPVD PVPVDIVLAQ SRELRMETVF RYANMYDRAI
ALLASGKVDL KPLISATFPF EDSIAAFDRA VEARPTDVKI QIKMGAS
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