| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_0536 |
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| Symbol | pdhC2 |
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| ID | 5711989 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dinoroseobacter shibae DFL 12 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009952 |
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| Strand | + |
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| Start bp | 520939 |
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| End bp | 522135 |
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| Gene Length | 1197 bp |
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| Protein Length | 398 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 641266438 |
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| Product | branched-chain alpha-keto acid dehydrogenase subunit E2 |
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| Protein accession | YP_001531883 |
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| Protein GI | 159043089 |
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| COG category | [C] Energy production and conversion
[R] General function prediction only |
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| COG ID | [COG0508] Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component, and related enzymes
[COG0596] Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 19 |
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| Plasmid unclonability p-value | 0.13712 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 44 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCCGCGAC TGGGCGAGAC GATGGAAGAA GCGACCATCG CTGACTGGCT GGTCCAGCCC
GGACAGAGCT TCAAGCGCGG CGATCCTTTG CTCGAGGTCG AGACCGACAA GACAATGGTG
GAATACCCGG CGTTGGGCGA TGGCATACTG GTGGAAACAC TTGTCGGCCC CGGTGACGTG
GTTGAAGTCG GCACGCCGAT TGCGGTGATT GAAACACGCG ATGCGTGGGA CAGTGTGGAA
GAGCCGGACG CCGCTGCATC TTCCCCCGGG GCCGCTCCTT CGGAAGTGGC GGGCACCGCG
GCGCAAGCGC TCGTCTCACC TGATGCAGCG CGTCTTCGGG CCACGCCATT GGCGCGTCGG
ATCGCCAGAG AGAACCATAT TGCGCTTTCC CAGGTGACCG GCACAGGACG TCGCGGGCGA
ATAGAAGCGG GCGATGTGCG CGTTATGCTG ACGGAAGGTG CATCGACACC AGCGGTGATC
CAGGCAGCGC CCGGGGCGAC GGCATCCGTC TATTGCGTGC ATGGCTTCGC CGGACTCGGT
TCGAACTGGG CCGCCCTGCG GGCCAGCCTG CAACGCGCGG GCATTACATC GAGTGCGCCT
GATCTGCCCG GACACGGGCG CAATCGGGTT GACGCCGGAA GTATCGAGGC GCTTGCCGAC
TGGCTTGCTG CGGACCTTGC AAGCCAACCG GAGCCGGTTC AGCTTGTGGG GCACTCTCTT
GGCGCGCATG TCGCGGCCCG GGCTGCGCAG CGCGTTCCGT CCCGGGTTGC CCGGCTCACG
CTGCTTGCTC CGGCAGGGTG CGGGATCGAG ATCAACGGTG CCTTTCTGTC CGGCATGGCG
GCCGCGCCCA GCGTTGGCGA GTTGGCCCAT CTAATGCGGC TCCTCGGTCG GAAAGCGGCA
GAGTTGGACA ATCACGCCCT GGAGGCCCTG TCTCGGGAGT TGCAGGGAGA TCGGCTTTCA
GCCTTGGCGG CGGCGGCGGC GCGCGCTGAT GTGCAGCGGA TCGACACGAT CGCTCCGCTG
CGCAGCCTGG CAGGCAAGAT ACCGGTCCGG GCGATCTTCG GGCTCTCCGA CCAGATCATT
CCGCGCGATC ACGCGTTTCA CTTGCCGCCT GCCGTGGCCT GTCACATGCT GGAGGCTGGA
CATATGCCGC ACTGGGACGC GACGGAGGAG GTCGCGTCGA TTATCGCGGC ACCGTGA
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| Protein sequence | MPRLGETMEE ATIADWLVQP GQSFKRGDPL LEVETDKTMV EYPALGDGIL VETLVGPGDV
VEVGTPIAVI ETRDAWDSVE EPDAAASSPG AAPSEVAGTA AQALVSPDAA RLRATPLARR
IARENHIALS QVTGTGRRGR IEAGDVRVML TEGASTPAVI QAAPGATASV YCVHGFAGLG
SNWAALRASL QRAGITSSAP DLPGHGRNRV DAGSIEALAD WLAADLASQP EPVQLVGHSL
GAHVAARAAQ RVPSRVARLT LLAPAGCGIE INGAFLSGMA AAPSVGELAH LMRLLGRKAA
ELDNHALEAL SRELQGDRLS ALAAAAARAD VQRIDTIAPL RSLAGKIPVR AIFGLSDQII
PRDHAFHLPP AVACHMLEAG HMPHWDATEE VASIIAAP
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