Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Dshi_0476 |
Symbol | gcd |
ID | 5711392 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Dinoroseobacter shibae DFL 12 |
Kingdom | Bacteria |
Replicon accession | NC_009952 |
Strand | + |
Start bp | 460857 |
End bp | 462659 |
Gene Length | 1803 bp |
Protein Length | 600 aa |
Translation table | 11 |
GC content | 60% |
IMG OID | 641266380 |
Product | quinoprotein glucose dehydrogenase |
Protein accession | YP_001531825 |
Protein GI | 159043031 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG4993] Glucose dehydrogenase |
TIGRFAM ID | [TIGR03075] PQQ-dependent dehydrogenase, methanol/ethanol family |
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Plasmid Coverage information |
Num covering plasmid clones | 24 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 45 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAGAAGGT TTTCGCTTCT GACATCAGGA ATTGCCCTTT GTGCCGCCAC TGTTGCGTAT GCAAATGACG ACTTGATCAC TCAAATGGAC GACTCGAAAC AATGGGCGAT CCAGACTGGC GACTATAAGA ACCACCGTTA CTCCGAACTG GATGAAATCA ACGCCGAGAA CGTGGGGGAT CTGCAGGTTG CCTGGACATT CTCGACCGGC GTTCTTCGCG GTCATGAAGG CTCGCCTCTG GTGATTGGCG ATACGATGTA CGTGCACACG CCGTTCCCGA ATATCGTCTA TGCCCTCGAT CTGTCCAATG AAGGCAAGAT CATCTGGAAG TACGAGCCCA AGCAGGACCC GGATGTGATT CCGGTGATGT GCTGCGACAC GGTGAACCGT GGTGTGGCCT ATGCGGATGG CAAGATCTTC CTGCACCAGG CCGACACCAA GGTCGTCGCA CTCGATGCCA ACACGGGCGA TGTGCTGTGG GAAGTCCAGA ATGGCGACCC GTCAATCGGC GAGACAAACA CCGCGACGGT TCTGCCGGTC AAGGACAAGG TCATCGTCGG CATCTCCGGC GGTGAGTTCG GTGTCCGCGG TCATGTCACG GCCTATGACA TCAACAGCGG CGAACTGGTA TGGCGGGCCT ATTCGCTGGG TCCAGATGAC GACATGCTTG TCGATCCGGA AAACACCACC CACTTGGGCA AGCCGATCGG CGAGAATTCG AGCCTGAATT CCTGGGAGGG CGATCAGTGG ATGATCGGCG GCGGCACCAC TTGGGGATGG TACGCAGCGG ACATGGAAGA GAATCTGTTC TACTACGGTA CCGGCAACCC CTCGACCTGG AACCCGGCCC AGCGGCCCGG CGACAATCGT TGGACGATGA CGGTCATGGC GCGCGATATC GATACCGGTA TGGCGAAATG GTTCTACCAG ATGACCCCGC ATGACGAGTG GGATTATGAC GGTGTGAACG AGAACATCCT GACCGAACAG GAATTCGACG GCGAGATGCG CAAGCTGCTC ACCCGCTTCG ATCGTAACGG CCTGGCGTAC ACCATGGACC GTGTGACCGG CGAATTGCTG GTGGCCGAGA AGTTCGACCC GGTCGTGAAC TGGACTACCG GTGTCGATAT GGACCCGAAC AGCGAAACCT ACGGTCGTCC GCAGGTGGTG GCACAGTATT CCACCGCGCA GAACGGTGAA GACGTCAACA CCACCGGCAT CTGCCCAGCT GCCCTGGGCA CCAAGGACCA GCAGCCGGCG GCCTATTCGC CCAAGACCCA GGTGTTCTAC GTGCCGACCA ACCACGTCTG CATGGACTAC GAACCCTTCC GGGTGAGCTA TACCGCAGGC CAGCCCTATG TCGGGGCGAC CCTGTCGATG TACCCGGCGC CGGACAGCCA TGGCGGCATG GGCAACTTCA TCGCCTGGGA CAATATCAAC GGCGAGATCT TGTGGTCCAT TCCCGAGAAG TTCTCTGTCT GGTCCGGTGC GCTGGCAACG GCTGGCGACG TCGTGTTCTA CGGTACGCTC GAAGGTCACC TGAAGGCGGT GCACGCGGAC ACGGGCGAGG AGCTCTATCG CTTCAAGACT CCGTCCGGGA TCATCGGTAA CGTGATGACC TACGAGCATG ACGGCAGACA GTATGTCGGC GTCTTGTCGG GTGTCGGCGG TTGGGCCGGG ATCGGCCTCG CAGCGGGCCT GACAAACCCC AATGACGGTC TGGGCGCCGT GGGCGGCTAT GCTGCCCTGA GTGACTACAC CGCCCTGGGC GGTCAGTTGA CCGTGTTCGC CCTGCCGAAC TGA
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Protein sequence | MRRFSLLTSG IALCAATVAY ANDDLITQMD DSKQWAIQTG DYKNHRYSEL DEINAENVGD LQVAWTFSTG VLRGHEGSPL VIGDTMYVHT PFPNIVYALD LSNEGKIIWK YEPKQDPDVI PVMCCDTVNR GVAYADGKIF LHQADTKVVA LDANTGDVLW EVQNGDPSIG ETNTATVLPV KDKVIVGISG GEFGVRGHVT AYDINSGELV WRAYSLGPDD DMLVDPENTT HLGKPIGENS SLNSWEGDQW MIGGGTTWGW YAADMEENLF YYGTGNPSTW NPAQRPGDNR WTMTVMARDI DTGMAKWFYQ MTPHDEWDYD GVNENILTEQ EFDGEMRKLL TRFDRNGLAY TMDRVTGELL VAEKFDPVVN WTTGVDMDPN SETYGRPQVV AQYSTAQNGE DVNTTGICPA ALGTKDQQPA AYSPKTQVFY VPTNHVCMDY EPFRVSYTAG QPYVGATLSM YPAPDSHGGM GNFIAWDNIN GEILWSIPEK FSVWSGALAT AGDVVFYGTL EGHLKAVHAD TGEELYRFKT PSGIIGNVMT YEHDGRQYVG VLSGVGGWAG IGLAAGLTNP NDGLGAVGGY AALSDYTALG GQLTVFALPN
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