Gene Dshi_0476 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDshi_0476 
Symbolgcd 
ID5711392 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDinoroseobacter shibae DFL 12 
KingdomBacteria 
Replicon accessionNC_009952 
Strand
Start bp460857 
End bp462659 
Gene Length1803 bp 
Protein Length600 aa 
Translation table11 
GC content60% 
IMG OID641266380 
Productquinoprotein glucose dehydrogenase 
Protein accessionYP_001531825 
Protein GI159043031 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG4993] Glucose dehydrogenase 
TIGRFAM ID[TIGR03075] PQQ-dependent dehydrogenase, methanol/ethanol family 


Plasmid Coverage information

Num covering plasmid clones24 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones45 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAGAAGGT TTTCGCTTCT GACATCAGGA ATTGCCCTTT GTGCCGCCAC TGTTGCGTAT 
GCAAATGACG ACTTGATCAC TCAAATGGAC GACTCGAAAC AATGGGCGAT CCAGACTGGC
GACTATAAGA ACCACCGTTA CTCCGAACTG GATGAAATCA ACGCCGAGAA CGTGGGGGAT
CTGCAGGTTG CCTGGACATT CTCGACCGGC GTTCTTCGCG GTCATGAAGG CTCGCCTCTG
GTGATTGGCG ATACGATGTA CGTGCACACG CCGTTCCCGA ATATCGTCTA TGCCCTCGAT
CTGTCCAATG AAGGCAAGAT CATCTGGAAG TACGAGCCCA AGCAGGACCC GGATGTGATT
CCGGTGATGT GCTGCGACAC GGTGAACCGT GGTGTGGCCT ATGCGGATGG CAAGATCTTC
CTGCACCAGG CCGACACCAA GGTCGTCGCA CTCGATGCCA ACACGGGCGA TGTGCTGTGG
GAAGTCCAGA ATGGCGACCC GTCAATCGGC GAGACAAACA CCGCGACGGT TCTGCCGGTC
AAGGACAAGG TCATCGTCGG CATCTCCGGC GGTGAGTTCG GTGTCCGCGG TCATGTCACG
GCCTATGACA TCAACAGCGG CGAACTGGTA TGGCGGGCCT ATTCGCTGGG TCCAGATGAC
GACATGCTTG TCGATCCGGA AAACACCACC CACTTGGGCA AGCCGATCGG CGAGAATTCG
AGCCTGAATT CCTGGGAGGG CGATCAGTGG ATGATCGGCG GCGGCACCAC TTGGGGATGG
TACGCAGCGG ACATGGAAGA GAATCTGTTC TACTACGGTA CCGGCAACCC CTCGACCTGG
AACCCGGCCC AGCGGCCCGG CGACAATCGT TGGACGATGA CGGTCATGGC GCGCGATATC
GATACCGGTA TGGCGAAATG GTTCTACCAG ATGACCCCGC ATGACGAGTG GGATTATGAC
GGTGTGAACG AGAACATCCT GACCGAACAG GAATTCGACG GCGAGATGCG CAAGCTGCTC
ACCCGCTTCG ATCGTAACGG CCTGGCGTAC ACCATGGACC GTGTGACCGG CGAATTGCTG
GTGGCCGAGA AGTTCGACCC GGTCGTGAAC TGGACTACCG GTGTCGATAT GGACCCGAAC
AGCGAAACCT ACGGTCGTCC GCAGGTGGTG GCACAGTATT CCACCGCGCA GAACGGTGAA
GACGTCAACA CCACCGGCAT CTGCCCAGCT GCCCTGGGCA CCAAGGACCA GCAGCCGGCG
GCCTATTCGC CCAAGACCCA GGTGTTCTAC GTGCCGACCA ACCACGTCTG CATGGACTAC
GAACCCTTCC GGGTGAGCTA TACCGCAGGC CAGCCCTATG TCGGGGCGAC CCTGTCGATG
TACCCGGCGC CGGACAGCCA TGGCGGCATG GGCAACTTCA TCGCCTGGGA CAATATCAAC
GGCGAGATCT TGTGGTCCAT TCCCGAGAAG TTCTCTGTCT GGTCCGGTGC GCTGGCAACG
GCTGGCGACG TCGTGTTCTA CGGTACGCTC GAAGGTCACC TGAAGGCGGT GCACGCGGAC
ACGGGCGAGG AGCTCTATCG CTTCAAGACT CCGTCCGGGA TCATCGGTAA CGTGATGACC
TACGAGCATG ACGGCAGACA GTATGTCGGC GTCTTGTCGG GTGTCGGCGG TTGGGCCGGG
ATCGGCCTCG CAGCGGGCCT GACAAACCCC AATGACGGTC TGGGCGCCGT GGGCGGCTAT
GCTGCCCTGA GTGACTACAC CGCCCTGGGC GGTCAGTTGA CCGTGTTCGC CCTGCCGAAC
TGA
 
Protein sequence
MRRFSLLTSG IALCAATVAY ANDDLITQMD DSKQWAIQTG DYKNHRYSEL DEINAENVGD 
LQVAWTFSTG VLRGHEGSPL VIGDTMYVHT PFPNIVYALD LSNEGKIIWK YEPKQDPDVI
PVMCCDTVNR GVAYADGKIF LHQADTKVVA LDANTGDVLW EVQNGDPSIG ETNTATVLPV
KDKVIVGISG GEFGVRGHVT AYDINSGELV WRAYSLGPDD DMLVDPENTT HLGKPIGENS
SLNSWEGDQW MIGGGTTWGW YAADMEENLF YYGTGNPSTW NPAQRPGDNR WTMTVMARDI
DTGMAKWFYQ MTPHDEWDYD GVNENILTEQ EFDGEMRKLL TRFDRNGLAY TMDRVTGELL
VAEKFDPVVN WTTGVDMDPN SETYGRPQVV AQYSTAQNGE DVNTTGICPA ALGTKDQQPA
AYSPKTQVFY VPTNHVCMDY EPFRVSYTAG QPYVGATLSM YPAPDSHGGM GNFIAWDNIN
GEILWSIPEK FSVWSGALAT AGDVVFYGTL EGHLKAVHAD TGEELYRFKT PSGIIGNVMT
YEHDGRQYVG VLSGVGGWAG IGLAAGLTNP NDGLGAVGGY AALSDYTALG GQLTVFALPN